Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGGJKKJF_9 | 4067462 | 4068325 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| CGGJKKJF_9 | 4064809 | 4065948 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| CGGJKKJF_9 | 4063704 | 4064489 | ErmF | ARO:3000498 | ErmF | 97.32 | 98.12 | M17124.1 |
| CGGJKKJF_9 | 4047703 | 4049226 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 77.17 | Z21523.1 |
| CGGJKKJF_9 | 1819499 | 1820797 | tet(Q) | ARO:3000191 | tet(Q) | 96.99 | 65.75 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGGJKKJF_9 | 4063704 | 4064503 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 99.88 | M62487 |
| CGGJKKJF_9 | 1819499 | 1821425 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.74 | 100.00 | X58717 |
| CGGJKKJF_9 | 4066117 | 4067284 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.57 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGGJKKJF_9 | 4067462 | 4068322 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| CGGJKKJF_9 | 919422 | 920327 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| CGGJKKJF_9 | 4064809 | 4065945 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| CGGJKKJF_9 | 4063707 | 4064498 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 99.25 | WP_063844771.1 |
| CGGJKKJF_9 | 4047706 | 4049229 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIALX | 97.24 | 79.25 | WP_002560998.1 |
| CGGJKKJF_9 | 1819502 | 1821100 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 95.34 | 83.62 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CGGJKKJF_2 | 1445 | 2124 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGGJKKJF_1 | 1.0 | 0.0 | 1.0 |
| CGGJKKJF_2 | 1.0 | 0.0 | 1.0 |
| CGGJKKJF_3 | 1.0 | 0.0 | 1.0 |
| CGGJKKJF_4 | 0.0 | 1.0 | 0.0 |
| CGGJKKJF_5 | 1.0 | 0.0 | 1.0 |
| CGGJKKJF_6 | 1.0 | 0.0 | 1.0 |
| CGGJKKJF_7 | 0.0 | 1.0 | 0.0 |
| CGGJKKJF_8 | 0.0 | 1.0 | 0.0 |
| CGGJKKJF_9 | 0.0 | 1.0 | 0.0 |
| CGGJKKJF_10 | 1.0 | 0.0 | 1.0 |
| CGGJKKJF_11 | 1.0 | 0.0 | 1.0 |
| CGGJKKJF_12 | 0.0 | 1.0 | 0.0 |
| CGGJKKJF_13 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)