Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 0 | 0 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCCMEGFO_2 | 5956041 | 5956973 | CfxA2 | ARO:3003002 | CfxA2 | 99.68 | 96.57 | AF118110.1 |
| HCCMEGFO_2 | 5605689 | 5606915 | EreD | ARO:3004608 | EreD | 95.34 | 100.00 | KP265721.1 |
| HCCMEGFO_2 | 5604625 | 5605488 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| HCCMEGFO_2 | 5597912 | 5598832 | ErmF | ARO:3000498 | ErmF | 98.50 | 115.04 | M17124.1 |
| HCCMEGFO_2 | 4580434 | 4581399 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| HCCMEGFO_2 | 1061310 | 1062275 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| HCCMEGFO_2 | 519818 | 520783 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HCCMEGFO_2 | 1061310 | 1062275 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| HCCMEGFO_2 | 1061310 | 1062275 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| HCCMEGFO_2 | 1061310 | 1062275 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| HCCMEGFO_2 | 1061310 | 1062275 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| HCCMEGFO_2 | 5596884 | 5597709 | blaOXA-347 | Unknown Beta-lactam | 99.88 | 100.00 | ACWG01000053 |
| HCCMEGFO_2 | 5597912 | 5598712 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| HCCMEGFO_2 | 5605689 | 5606915 | ere(D) | Erythromycin | 96.66 | 100.00 | KP265721 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCCMEGFO_2 | 5604625 | 5605485 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HCCMEGFO_2 | 1061313 | 1062275 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| HCCMEGFO_2 | 4580434 | 4581396 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| HCCMEGFO_2 | 519821 | 520783 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| HCCMEGFO_2 | 5956044 | 5957003 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.06 | 99.69 | WP_004339683.1 |
| HCCMEGFO_2 | 5597915 | 5598712 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| HCCMEGFO_2 | 5597110 | 5597706 | blaOXA | class D beta-lactamase | PARTIALX | 98.01 | 73.36 | WP_004295324.1 |
| HCCMEGFO_2 | 5605692 | 5606915 | ere(D) | EreD family erythromycin esterase | BLASTX | 95.34 | 100.00 | WP_015345560.1 |
| HCCMEGFO_2 | 5432022 | 5432975 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | BLASTX | 83.65 | 99.07 | WP_057280848.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCCMEGFO_1 | 1.0 | 0.0 | 1.0 |
| HCCMEGFO_2 | 0.0 | 1.0 | 0.0 |
| HCCMEGFO_3 | 0.0 | 1.0 | 0.0 |
| HCCMEGFO_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)