Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JMPDBEOH_3 | 3440914 | 3441648 | ErmG | ARO:3000522 | ErmG | 98.36 | 100.00 | L42817.1 |
| JMPDBEOH_3 | 1873205 | 1875130 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| JMPDBEOH_3 | 699778 | 700743 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JMPDBEOH_3 | 699778 | 700743 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| JMPDBEOH_3 | 1873205 | 1875130 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| JMPDBEOH_3 | 3440914 | 3441648 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.05 | 100.00 | M15332 |
| JMPDBEOH_3 | 3438174 | 3439391 | mef(A) | Erythromycin, Azithromycin | 95.24 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JMPDBEOH_3 | 699778 | 700740 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| JMPDBEOH_3 | 1873208 | 1875130 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| JMPDBEOH_3 | 3438174 | 3439388 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 99.01 | 99.26 | WP_012102963.1 |
| JMPDBEOH_3 | 3440914 | 3441645 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 98.36 | 100.00 | WP_063844787.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JMPDBEOH_1 | 1.0 | 0.0 | 1.0 |
| JMPDBEOH_2 | 1.0 | 0.0 | 1.0 |
| JMPDBEOH_3 | 0.0 | 1.0 | 0.0 |
| JMPDBEOH_4 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JMPDBEOH_3 | 185448 | 197438 | False | Unknown | VOG4568, |
| JMPDBEOH_3 | 1758340 | 1766707 | True | Myoviridae | / |
| JMPDBEOH_3 | 4380038 | 4383990 | False | Unknown | VOG8909, |
| JMPDBEOH_3 | 5210490 | 5221320 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)