Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OIFGJAIE_4 | 3923223 | 3924113 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| OIFGJAIE_4 | 3051836 | 3052573 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| OIFGJAIE_4 | 1080812 | 1082737 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OIFGJAIE_4 | 1080812 | 1082737 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| OIFGJAIE_4 | 3051836 | 3052573 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OIFGJAIE_4 | 4486583 | 4487092 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| OIFGJAIE_4 | 3058098 | 3058745 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | PARTIALX | 100.00 | 83.72 | WP_002578722.1 |
| OIFGJAIE_4 | 1080812 | 1082734 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| OIFGJAIE_4 | 4487120 | 4488025 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | PARTIALX | 99.34 | 75.31 | WP_063853729.1 |
| OIFGJAIE_4 | 3051839 | 3052573 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| OIFGJAIE_4 | 3923223 | 3924110 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OIFGJAIE_2 | 1 | 614 | repUS2 | 616 / 681 | 98.70 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OIFGJAIE_1 | 1.0 | 0.0 | 1.0 |
| OIFGJAIE_2 | 1.0 | 0.0 | 1.0 |
| OIFGJAIE_3 | 1.0 | 0.0 | 1.0 |
| OIFGJAIE_4 | 0.0 | 1.0 | 0.0 |
| OIFGJAIE_5 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OIFGJAIE_4 | 163181 | 183416 | True | Myoviridae | VOG4575, |
| OIFGJAIE_4 | 1072276 | 1075716 | False | Unknown | VOG0189 |
| OIFGJAIE_4 | 3067309 | 3091756 | True | Siphoviridae | VOG0275, |
| OIFGJAIE_4 | 3180923 | 3191457 | True | Myoviridae | VOG1931, |
| OIFGJAIE_4 | 4310360 | 4321591 | True | Myoviridae | VOG8625, |
Phigaro v2.4.0 (Database: Jan. 2024 release)