Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJEBAEAF_2 | 6041590 | 6043515 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GJEBAEAF_2 | 4316056 | 4317192 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| GJEBAEAF_2 | 4311416 | 4312642 | EreD | ARO:3004608 | EreD | 95.34 | 100.00 | KP265721.1 |
| GJEBAEAF_2 | 4310352 | 4311215 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| GJEBAEAF_2 | 4307496 | 4308350 | ErmF | ARO:3000498 | ErmF | 98.50 | 106.77 | M17124.1 |
| GJEBAEAF_2 | 4306469 | 4307293 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GJEBAEAF_2 | 4306469 | 4307293 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| GJEBAEAF_2 | 6041590 | 6043515 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GJEBAEAF_2 | 4316026 | 4317192 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| GJEBAEAF_2 | 4318985 | 4319798 | sul2 | Sulfamethoxazole | 99.51 | 99.63 | AY034138 |
| GJEBAEAF_2 | 4307496 | 4308296 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| GJEBAEAF_2 | 4311416 | 4312642 | ere(D) | Erythromycin | 96.66 | 100.00 | KP265721 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJEBAEAF_2 | 4310352 | 4311212 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| GJEBAEAF_2 | 4306469 | 4307290 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| GJEBAEAF_2 | 4316026 | 4317189 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| GJEBAEAF_2 | 6041593 | 6043515 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GJEBAEAF_2 | 4307499 | 4308296 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| GJEBAEAF_2 | 4318985 | 4319677 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | PARTIALX | 97.40 | 85.24 | WP_001043260.1 |
| GJEBAEAF_2 | 4311419 | 4312642 | ere(D) | EreD family erythromycin esterase | BLASTX | 95.34 | 100.00 | WP_015345560.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GJEBAEAF_1 | 7 | 587 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GJEBAEAF_1 | 1.0 | 0.0 | 1.0 |
| GJEBAEAF_2 | 0.0 | 1.0 | 0.0 |
| GJEBAEAF_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GJEBAEAF_2 | 5685089 | 5697594 | False | Siphoviridae | VOG8171, |
Phigaro v2.4.0 (Database: Jan. 2024 release)