Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMBPHOEI_3 | 170740 | 171706 | cfxA3 | Ampicillin | 99.59 | 100.00 | AF472622 |
| CMBPHOEI_3 | 170740 | 171706 | cfxA4 | Unknown Beta-lactam | 99.59 | 100.00 | AY769933 |
| CMBPHOEI_3 | 170740 | 171706 | cfxA5 | Unknown Beta-lactam | 99.59 | 100.00 | AY769934 |
| CMBPHOEI_3 | 170740 | 171706 | cfxA | Cefoxitin, Ampicillin | 99.59 | 100.00 | U38243 |
| CMBPHOEI_3 | 220091 | 222019 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.43 | 99.95 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CMBPHOEI_2 | 1445 | 2124 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMBPHOEI_1 | 1.0 | 0.0 | 1.0 |
| CMBPHOEI_2 | 1.0 | 0.0 | 1.0 |
| CMBPHOEI_3 | 0.0 | 1.0 | 0.0 |
| CMBPHOEI_4 | 1.0 | 0.0 | 1.0 |
| CMBPHOEI_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMBPHOEI_3 | 2522474 | 2529537 | False | Unknown | VOG7638, |
| CMBPHOEI_3 | 4536687 | 4544150 | False | Siphoviridae | VOG6488, |
| CMBPHOEI_3 | 5214942 | 5221728 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)