Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMGPNNDN_10 | 1761264 | 1763189 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LMGPNNDN_10 | 1020689 | 1021579 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| LMGPNNDN_10 | 1001375 | 1003300 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LMGPNNDN_11 | 449155 | 449970 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| LMGPNNDN_6 | 62762 | 63499 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| LMGPNNDN_2 | 840 | 1655 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LMGPNNDN_11 | 449155 | 449970 | sul2 | Sulfamethoxazole | 99.88 | 100.00 | AY034138 |
| LMGPNNDN_6 | 62762 | 63499 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| LMGPNNDN_10 | 1001375 | 1003300 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
| LMGPNNDN_11 | 451072 | 452022 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| LMGPNNDN_11 | 451072 | 452022 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| LMGPNNDN_11 | 451072 | 452022 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| LMGPNNDN_11 | 451072 | 452022 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMGPNNDN_10 | 1020689 | 1021576 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| LMGPNNDN_11 | 449158 | 449970 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| LMGPNNDN_2 | 840 | 1652 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| LMGPNNDN_6 | 62762 | 63496 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| LMGPNNDN_10 | 1001378 | 1003300 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LMGPNNDN_10 | 1761264 | 1763186 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LMGPNNDN_10 | 1359109 | 1359885 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | INTERNAL_STOP | 87.31 | 89.30 | WP_001043260.1 |
| LMGPNNDN_11 | 451071 | 452024 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LMGPNNDN_3 | 1444 | 2119 | repUS2 | 678 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMGPNNDN_1 | 1.0 | 0.0 | 1.0 |
| LMGPNNDN_2 | 1.0 | 0.0 | 1.0 |
| LMGPNNDN_3 | 1.0 | 0.0 | 1.0 |
| LMGPNNDN_4 | 1.0 | 0.0 | 1.0 |
| LMGPNNDN_5 | 1.0 | 0.0 | 1.0 |
| LMGPNNDN_6 | 0.0 | 1.0 | 0.0 |
| LMGPNNDN_7 | 1.0 | 0.0 | 1.0 |
| LMGPNNDN_8 | 1.0 | 0.0 | 1.0 |
| LMGPNNDN_9 | 0.0 | 1.0 | 0.0 |
| LMGPNNDN_10 | 0.0 | 1.0 | 0.0 |
| LMGPNNDN_11 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMGPNNDN_10 | 3118832 | 3125230 | False | Unknown | VOG0944, |
Phigaro v2.4.0 (Database: Jan. 2024 release)