Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 0 | 0 | 10.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHHPFMCJ_4 | 5652447 | 5653412 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
| OHHPFMCJ_4 | 5316102 | 5317067 | CfxA2 | ARO:3003002 | CfxA2 | 99.07 | 100.00 | AF118110.1 |
| OHHPFMCJ_4 | 5152066 | 5153031 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
| OHHPFMCJ_4 | 4645549 | 4647402 | tet(Q) | ARO:3000191 | tet(Q) | 95.72 | 93.91 | Z21523.1 |
| OHHPFMCJ_4 | 4271532 | 4272497 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
| OHHPFMCJ_4 | 4153136 | 4154101 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
| OHHPFMCJ_4 | 3746077 | 3747042 | CfxA2 | ARO:3003002 | CfxA2 | 99.07 | 100.00 | AF118110.1 |
| OHHPFMCJ_4 | 2714164 | 2715096 | CfxA2 | ARO:3003002 | CfxA2 | 99.03 | 96.57 | AF118110.1 |
| OHHPFMCJ_4 | 270986 | 271918 | CfxA2 | ARO:3003002 | CfxA2 | 99.03 | 96.57 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OHHPFMCJ_4 | 1518632 | 1519598 | cfxA3 | Ampicillin | 99.59 | 100.00 | AF472622 |
| OHHPFMCJ_4 | 1518632 | 1519598 | cfxA4 | Unknown Beta-lactam | 99.59 | 100.00 | AY769933 |
| OHHPFMCJ_4 | 1518632 | 1519598 | cfxA5 | Unknown Beta-lactam | 99.59 | 100.00 | AY769934 |
| OHHPFMCJ_4 | 1518632 | 1519598 | cfxA | Cefoxitin, Ampicillin | 99.59 | 100.00 | U38243 |
| OHHPFMCJ_4 | 4645476 | 4647402 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHHPFMCJ_4 | 4153136 | 4154098 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
| OHHPFMCJ_4 | 4271532 | 4272494 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
| OHHPFMCJ_4 | 5152069 | 5153031 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
| OHHPFMCJ_4 | 5652450 | 5653412 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
| OHHPFMCJ_4 | 3746077 | 3747039 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.07 | 100.00 | WP_004339683.1 |
| OHHPFMCJ_4 | 5316102 | 5317064 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.07 | 100.00 | WP_004339683.1 |
| OHHPFMCJ_4 | 4645579 | 4647399 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.01 | 94.70 | WP_063856407.1 |
| OHHPFMCJ_4 | 270989 | 271948 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 98.44 | 99.69 | WP_004339683.1 |
| OHHPFMCJ_4 | 2714167 | 2715126 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 98.44 | 99.69 | WP_004339683.1 |
| OHHPFMCJ_4 | 1023273 | 1023884 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 94.17 | 64.17 | WP_004339683.1 |
| OHHPFMCJ_4 | 4350521 | 4351132 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 94.17 | 64.17 | WP_004339683.1 |
| OHHPFMCJ_4 | 61761 | 62372 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 94.17 | 64.17 | WP_004339683.1 |
| OHHPFMCJ_4 | 5979870 | 5980448 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | PARTIALX | 84.97 | 60.31 | WP_117664257.1 |
| OHHPFMCJ_4 | 1519005 | 1519589 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | PARTIALX | 84.62 | 60.94 | WP_117664257.1 |
| OHHPFMCJ_4 | 253070 | 253654 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | PARTIALX | 84.62 | 60.94 | WP_117664257.1 |
| OHHPFMCJ_4 | 3882707 | 3883291 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | PARTIALX | 84.62 | 60.94 | WP_117664257.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OHHPFMCJ_1 | 1.0 | 0.0 | 1.0 |
| OHHPFMCJ_2 | 1.0 | 0.0 | 1.0 |
| OHHPFMCJ_3 | 1.0 | 0.0 | 1.0 |
| OHHPFMCJ_4 | 0.0 | 1.0 | 0.0 |
| OHHPFMCJ_5 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OHHPFMCJ_4 | 4525698 | 4534366 | False | Siphoviridae | VOG6488, |
| OHHPFMCJ_4 | 4576599 | 4583927 | False | Unknown | VOG0292, |
| OHHPFMCJ_4 | 5324468 | 5333285 | False | Siphoviridae | VOG7483, |
Phigaro v2.4.0 (Database: Jan. 2024 release)