Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LPOLMMEP_12 | 6465499 | 6467424 | tet(Q) | ARO:3000191 | tet(Q) | 96.26 | 97.56 | Z21523.1 |
| LPOLMMEP_12 | 4700058 | 4701395 | tet(Q) | ARO:3000191 | tet(Q) | 95.90 | 67.73 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LPOLMMEP_12 | 6465499 | 6467424 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
| LPOLMMEP_12 | 5688956 | 5689906 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| LPOLMMEP_12 | 5688956 | 5689906 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| LPOLMMEP_12 | 5688956 | 5689906 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| LPOLMMEP_12 | 5688956 | 5689906 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LPOLMMEP_12 | 5809803 | 5810312 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| LPOLMMEP_12 | 6465502 | 6467424 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.38 | 100.00 | WP_063856407.1 |
| LPOLMMEP_12 | 5810340 | 5811242 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | PARTIALX | 99.34 | 75.06 | WP_063853729.1 |
| LPOLMMEP_12 | 4700022 | 4701395 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 93.01 | 71.45 | WP_002560998.1 |
| LPOLMMEP_12 | 5688955 | 5689908 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LPOLMMEP_4 | 931 | 1610 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPOLMMEP_1 | 1.0 | 0.0 | 1.0 |
| LPOLMMEP_2 | 1.0 | 0.0 | 1.0 |
| LPOLMMEP_3 | 1.0 | 0.0 | 1.0 |
| LPOLMMEP_4 | 1.0 | 0.0 | 1.0 |
| LPOLMMEP_5 | 1.0 | 0.0 | 1.0 |
| LPOLMMEP_6 | 1.0 | 0.0 | 1.0 |
| LPOLMMEP_7 | 1.0 | 0.0 | 1.0 |
| LPOLMMEP_8 | 1.0 | 0.0 | 1.0 |
| LPOLMMEP_9 | 0.0 | 1.0 | 0.0 |
| LPOLMMEP_10 | 0.0 | 1.0 | 0.0 |
| LPOLMMEP_11 | 0.0 | 1.0 | 0.0 |
| LPOLMMEP_12 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPOLMMEP_12 | 6336638 | 6340140 | False | Unknown | VOG5023, |
Phigaro v2.4.0 (Database: Jan. 2024 release)