Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLNOEFCN_3 | 3448174 | 3450120 | tet(Q) | ARO:3000191 | tet(Q) | 97.81 | 98.63 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CLNOEFCN_3 | 5972992 | 5973727 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.18 | 100.00 | M15332 |
| CLNOEFCN_3 | 3448208 | 3450120 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.75 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLNOEFCN_3 | 3448207 | 3450120 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
| CLNOEFCN_3 | 5973146 | 5973727 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | INTERNAL_STOP | 93.30 | 79.51 | WP_014387027.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CLNOEFCN_1 | 1 | 644 | repUS2 | 646 / 681 | 98.76 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CLNOEFCN_1 | 1.0 | 0.0 | 1.0 |
| CLNOEFCN_2 | 1.0 | 0.0 | 1.0 |
| CLNOEFCN_3 | 0.0 | 1.0 | 0.0 |
| CLNOEFCN_4 | 1.0 | 0.0 | 1.0 |
| CLNOEFCN_5 | 0.0 | 1.0 | 0.0 |
| CLNOEFCN_6 | 1.0 | 0.0 | 1.0 |
| CLNOEFCN_7 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CLNOEFCN_3 | 2026163 | 2036868 | False | Unknown | VOG5821, |
| CLNOEFCN_3 | 3909997 | 3915553 | False | Unknown | VOG8909, |
| CLNOEFCN_3 | 4443592 | 4449623 | False | Unknown | VOG6366, |
| CLNOEFCN_3 | 4925111 | 4935985 | False | Siphoviridae | VOG3992, |
| CLNOEFCN_3 | 5326161 | 5334047 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)