Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 0 | 0 | 13.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IINFIDNE_5 | 5471110 | 5472075 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| IINFIDNE_5 | 5305313 | 5306278 | CfxA4 | ARO:3003005 | CfxA4 | 99.38 | 100.00 | AY769933.1 |
| IINFIDNE_5 | 4391512 | 4392477 | CfxA4 | ARO:3003005 | CfxA4 | 99.38 | 100.00 | AY769933.1 |
| IINFIDNE_5 | 3713720 | 3714685 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| IINFIDNE_5 | 3079919 | 3080884 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| IINFIDNE_5 | 1509561 | 1510526 | CfxA4 | ARO:3003005 | CfxA4 | 99.38 | 100.00 | AY769933.1 |
| IINFIDNE_5 | 749678 | 750643 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IINFIDNE_5 | 3079919 | 3080884 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| IINFIDNE_5 | 3079919 | 3080884 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| IINFIDNE_5 | 3079919 | 3080884 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| IINFIDNE_5 | 3079919 | 3080884 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| IINFIDNE_5 | 2667869 | 2669791 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.58 | 99.79 | L33696 |
| IINFIDNE_5 | 4996083 | 4996875 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 83.54 | 98.75 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IINFIDNE_5 | 3079922 | 3080884 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| IINFIDNE_5 | 3713720 | 3714682 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| IINFIDNE_5 | 5471113 | 5472075 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| IINFIDNE_5 | 749678 | 750640 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| IINFIDNE_4 | 3833 | 4678 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 100.00 | 87.85 | WP_004339683.1 |
| IINFIDNE_5 | 1782409 | 1783254 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 100.00 | 87.85 | WP_004339683.1 |
| IINFIDNE_5 | 3200884 | 3201729 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 100.00 | 87.85 | WP_004339683.1 |
| IINFIDNE_5 | 3508351 | 3509094 | cfxA | CfxA family broad-spectrum class A beta-lactamase | PARTIALX | 100.00 | 77.26 | WP_004339683.1 |
| IINFIDNE_5 | 1509564 | 1510526 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | BLASTX | 99.38 | 100.00 | WP_057280848.1 |
| IINFIDNE_5 | 4391515 | 4392477 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | BLASTX | 99.38 | 100.00 | WP_057280848.1 |
| IINFIDNE_5 | 5305316 | 5306278 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | BLASTX | 99.38 | 100.00 | WP_057280848.1 |
| IINFIDNE_5 | 4996088 | 4996879 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 80.68 | 99.25 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IINFIDNE_1 | 1.0 | 0.0 | 1.0 |
| IINFIDNE_2 | 1.0 | 0.0 | 1.0 |
| IINFIDNE_3 | 1.0 | 0.0 | 1.0 |
| IINFIDNE_4 | 0.0 | 1.0 | 0.0 |
| IINFIDNE_5 | 0.0 | 1.0 | 0.0 |
| IINFIDNE_6 | 0.0 | 1.0 | 0.0 |
| IINFIDNE_7 | 1.0 | 0.0 | 1.0 |
| IINFIDNE_8 | 1.0 | 0.0 | 1.0 |
| IINFIDNE_9 | 1.0 | 0.0 | 1.0 |
| IINFIDNE_10 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IINFIDNE_5 | 2075741 | 2085369 | True | Unknown | VOG4551, |
| IINFIDNE_5 | 4706901 | 4712881 | False | Unknown | VOG5023, |
| IINFIDNE_5 | 5405784 | 5414894 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)