Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JCPGBHHO_1 | 46749 | 47612 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| JCPGBHHO_1 | 45322 | 46548 | EreD | ARO:3004608 | EreD | 95.34 | 100.00 | KP265721.1 |
| JCPGBHHO_1 | 43798 | 44958 | tet(X) | ARO:3000205 | tet(X) | 99.48 | 99.48 | M37699.1 |
| JCPGBHHO_7 | 919726 | 921063 | tet(Q) | ARO:3000191 | tet(Q) | 94.08 | 67.73 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JCPGBHHO_1 | 43798 | 44964 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| JCPGBHHO_7 | 919726 | 921650 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 99.95 | L33696 |
| JCPGBHHO_1 | 45322 | 46548 | ere(D) | Erythromycin | 96.66 | 100.00 | KP265721 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JCPGBHHO_1 | 46752 | 47612 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| JCPGBHHO_1 | 43801 | 44964 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| JCPGBHHO_1 | 45322 | 46545 | ere(D) | EreD family erythromycin esterase | BLASTX | 95.34 | 100.00 | WP_015345560.1 |
| JCPGBHHO_7 | 919726 | 921099 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 94.10 | 71.45 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JCPGBHHO_2 | 1868 | 2448 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JCPGBHHO_1 | 1.0 | 0.0 | 1.0 |
| JCPGBHHO_2 | 1.0 | 0.0 | 1.0 |
| JCPGBHHO_3 | 1.0 | 0.0 | 1.0 |
| JCPGBHHO_4 | 1.0 | 0.0 | 1.0 |
| JCPGBHHO_5 | 1.0 | 0.0 | 1.0 |
| JCPGBHHO_6 | 0.0 | 1.0 | 0.0 |
| JCPGBHHO_7 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JCPGBHHO_7 | 3983456 | 3985879 | False | Unknown | VOG5023 |
| JCPGBHHO_7 | 6161823 | 6171242 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)