Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDIJOJFD_4 | 1403455 | 1404591 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| MDIJOJFD_4 | 1402117 | 1403256 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| MDIJOJFD_4 | 1401012 | 1401797 | ErmF | ARO:3000498 | ErmF | 97.32 | 98.12 | M17124.1 |
| MDIJOJFD_4 | 928047 | 929972 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| MDIJOJFD_4 | 369611 | 371536 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDIJOJFD_4 | 369611 | 371536 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.0 | 100.00 | X58717 |
| MDIJOJFD_4 | 1403425 | 1404591 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| MDIJOJFD_4 | 1401012 | 1401811 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 99.88 | M62487 |
| MDIJOJFD_4 | 3694981 | 3695931 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| MDIJOJFD_4 | 3694981 | 3695931 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| MDIJOJFD_4 | 3694981 | 3695931 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| MDIJOJFD_4 | 3694981 | 3695931 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDIJOJFD_4 | 369614 | 371536 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| MDIJOJFD_4 | 928047 | 929969 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| MDIJOJFD_4 | 1403425 | 1404588 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| MDIJOJFD_4 | 1402117 | 1403253 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| MDIJOJFD_4 | 1401015 | 1401806 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 99.25 | WP_063844771.1 |
| MDIJOJFD_4 | 1404900 | 1405628 | aadS | aminoglycoside 6-adenylyltransferase AadS | PARTIALX | 98.35 | 84.67 | WP_003013318.1 |
| MDIJOJFD_4 | 3694979 | 3695932 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MDIJOJFD_1 | 1.0 | 0.0 | 1.0 |
| MDIJOJFD_2 | 1.0 | 0.0 | 1.0 |
| MDIJOJFD_3 | 1.0 | 0.0 | 1.0 |
| MDIJOJFD_4 | 0.0 | 1.0 | 0.0 |
| MDIJOJFD_5 | 1.0 | 0.0 | 1.0 |
| MDIJOJFD_6 | 1.0 | 0.0 | 1.0 |
| MDIJOJFD_7 | 1.0 | 0.0 | 1.0 |
| MDIJOJFD_8 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MDIJOJFD_4 | 212810 | 216562 | True | Siphoviridae | VOG0275, |
| MDIJOJFD_4 | 4288341 | 4293613 | False | Myoviridae | VOG8909, |
Phigaro v2.4.0 (Database: Jan. 2024 release)