Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JNEEDLAI_74 | 102059 | 102760 | WalR | 1.55e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JNEEDLAI_53 | 1859 | 2793 | rep28 | 941 / 930 | 82.47 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JNEEDLAI_3 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_5 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_8 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_11 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_14 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_22 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_25 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_27 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_29 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_31 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_33 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_36 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_38 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_39 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_42 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_44 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_45 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_48 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_49 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_50 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_51 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_52 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_53 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_54 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_55 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_56 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_57 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_58 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_59 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_60 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_61 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_62 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_63 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_64 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_65 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_66 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_67 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_68 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_69 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_70 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_72 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_73 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_74 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_76 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_77 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_78 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_81 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_83 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_85 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_87 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_88 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_92 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_93 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_94 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_96 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_97 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_98 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_100 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_101 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_102 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_105 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_107 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_111 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_112 | 0.0 | 1.0 | 0.0 |
| JNEEDLAI_116 | 1.0 | 0.0 | 1.0 |
| JNEEDLAI_119 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JNEEDLAI_33 | 6457 | 41311 | False | Myoviridae | VOG6495, VOG4829, VOG0787, VOG1638, VOG0655, VOG2085, VOG9706, VOG1309, VOG0186, VOG7236, VOG4693, VOG6005, VOG0044, VOG4010, VOG0198, VOG0796, VOG10227, VOG1912, VOG4564, VOG4865, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6131, VOG5068, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691 |
Phigaro v2.4.0 (Database: Jan. 2024 release)