Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JEHBKJAM_18 | 21804 | 22508 | WalR | 3.63e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JEHBKJAM_32 | 155114 | 154920 | CspR | 7.09e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JEHBKJAM_32 | 155114 | 154917 | CspA | 1.09e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JEHBKJAM_41 | 4004 | 4879 | rep38 | 876 / 903 | 99.20 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JEHBKJAM_1 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_2 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_3 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_4 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_5 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_7 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_9 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_14 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_15 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_16 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_17 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_18 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_19 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_20 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_21 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_22 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_24 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_26 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_28 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_29 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_30 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_31 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_32 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_33 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_34 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_36 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_37 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_38 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_39 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_40 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_41 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_42 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_43 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_44 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_45 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_48 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_50 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_54 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_56 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_59 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_65 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_66 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_69 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_77 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_78 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_79 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_80 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_81 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_82 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_83 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_84 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_85 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_86 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_87 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_88 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_89 | 1.0 | 0.0 | 1.0 |
| JEHBKJAM_90 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_91 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_92 | 0.0 | 1.0 | 0.0 |
| JEHBKJAM_93 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JEHBKJAM_17 | 667459 | 695413 | False | Siphoviridae | VOG10957, VOG8870, VOG10957, VOG4599, VOG4605, VOG0083, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG0044, VOG0044, VOG1298 |
Phigaro v2.4.0 (Database: Jan. 2024 release)