Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCJFDIHJ_18 | 48273 | 48974 | WalR | 8.61e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCJFDIHJ_1 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_4 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_5 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_7 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_8 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_10 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_11 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_12 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_13 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_14 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_15 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_16 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_17 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_18 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_19 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_20 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_21 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_22 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_23 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_24 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_26 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_28 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_29 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_30 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_31 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_32 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_33 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_34 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_35 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_36 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_37 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_38 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_39 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_41 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_42 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_44 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_45 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_49 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_50 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_51 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_52 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_53 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_54 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_56 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_58 | 1.0 | 0.0 | 1.0 |
| HCJFDIHJ_59 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_61 | 0.0 | 1.0 | 0.0 |
| HCJFDIHJ_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCJFDIHJ_4 | 8317 | 44140 | False | Myoviridae | VOG0685, VOG0322, VOG0226, VOG4799, VOG0025, VOG0514, VOG0514, VOG7484, VOG5545, VOG0536, VOG1298, VOG4010, VOG0198, VOG5446, VOG0796, VOG0275, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG5706, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4691 |
| HCJFDIHJ_50 | 195715 | 208198 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908 |
Phigaro v2.4.0 (Database: Jan. 2024 release)