Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LMFKICBK_154 | 191466 | 190762 | WalR | 1.66e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LMFKICBK_110 | 85967 | 85773 | CspR | 4.10e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LMFKICBK_110 | 85967 | 85770 | CspA | 6.29e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LMFKICBK_129 | 724 | 1659 | rep28 | 936 / 936 | 100.00 | CP005948 |
| LMFKICBK_104 | 596 | 1549 | repUS64 | 954 / 954 | 99.69 | JN601038 |
| LMFKICBK_54 | 4000 | 4962 | repUS73 | 978 / 1101 | 80.27 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMFKICBK_2 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_3 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_4 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_6 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_9 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_10 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_11 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_12 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_13 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_14 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_15 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_16 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_18 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_22 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_28 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_34 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_39 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_41 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_42 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_45 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_49 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_50 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_54 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_55 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_59 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_61 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_62 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_69 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_71 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_75 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_78 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_85 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_90 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_92 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_93 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_96 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_98 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_99 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_102 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_104 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_105 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_106 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_110 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_112 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_113 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_115 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_116 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_117 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_119 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_120 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_121 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_122 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_123 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_124 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_125 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_127 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_128 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_129 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_130 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_131 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_132 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_133 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_134 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_135 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_136 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_137 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_138 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_139 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_140 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_141 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_143 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_144 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_147 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_148 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_149 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_150 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_151 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_152 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_153 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_154 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_155 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_156 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_158 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_159 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_160 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_161 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_162 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_164 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_166 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_167 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_168 | 0.0 | 1.0 | 0.0 |
| LMFKICBK_170 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_171 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_174 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_175 | 1.0 | 0.0 | 1.0 |
| LMFKICBK_176 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMFKICBK_22 | 2528 | 22568 | False | Siphoviridae | VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG1637 |
| LMFKICBK_55 | 48998 | 77768 | False | Siphoviridae | VOG0054, VOG0753, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG0198, VOG0044 |
| LMFKICBK_123 | 1171 | 19832 | False | Siphoviridae | VOG0045, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG0694, VOG4713, VOG1320, VOG5660, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4856 |
| LMFKICBK_133 | 26169 | 32747 | False | Siphoviridae | VOG3304, VOG4602, VOG9667, VOG4552, VOG6450, VOG0226, VOG4799, VOG0514 |
| LMFKICBK_133 | 38487 | 48359 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209 |
| LMFKICBK_138 | 10530 | 16813 | False | Siphoviridae | VOG4602, VOG8520, VOG1563, VOG8222, VOG8925, VOG0321, VOG4548 |
Phigaro v2.4.0 (Database: Jan. 2024 release)