Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 27 | 35 | 44.20 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MCAKGOEL_45 | 19474 | 20343 | rfbA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681286 |
| MCAKGOEL_45 | 20343 | 20936 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| MCAKGOEL_80 | 26319 | 27128 | STU_RS16245 | 0.0 | Capsule | Immune modulation | 99.88 | 100.00 | WP_002948020 |
| MCAKGOEL_45 | 20343 | 20936 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| MCAKGOEL_80 | 25379 | 26335 | STU_RS16250 | 0.0 | Capsule | Immune modulation | 99.79 | 100.00 | WP_011226328 |
| MCAKGOEL_80 | 24234 | 25382 | STU_RS16255 | 0.0 | Capsule | Immune modulation | 99.74 | 100.00 | WP_041828290 |
| MCAKGOEL_45 | 20343 | 20936 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| MCAKGOEL_80 | 19887 | 20738 | rfbD | 0.0 | Capsule | Immune modulation | 99.65 | 100.00 | WP_014621820 |
| MCAKGOEL_87 | 1479 | 3137 | fbp54 | 0.0 | FBPs | Adherence | 99.58 | 100.00 | WP_011227179 |
| MCAKGOEL_80 | 27128 | 28333 | STU_RS16240 | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | WP_011226326 |
| MCAKGOEL_76 | 1142 | 1981 | cbpD | 0.0 | Autolysin | Exoenzyme | 99.52 | 100.00 | WP_011226733 |
| MCAKGOEL_80 | 23115 | 24125 | STU_RS16260 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011226330 |
| MCAKGOEL_80 | 29405 | 31189 | STU_RS16230 | 0.0 | Capsule | Immune modulation | 99.44 | 100.00 | WP_011226325 |
| MCAKGOEL_80 | 28353 | 29408 | STU_RS16235 | 0.0 | Capsule | Immune modulation | 99.43 | 100.00 | WP_002948022 |
| MCAKGOEL_64 | 13436 | 14036 | STR_RS05245 | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | WP_196767671 |
| MCAKGOEL_8 | 591 | 2006 | STER_RS05250 | 0.0 | Capsule | Immune modulation | 99.15 | 100.00 | WP_011681165 |
| MCAKGOEL_64 | 14188 | 14923 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 98.91 | 99.33 | WP_011681174 |
| MCAKGOEL_46 | 14617 | 15378 | srtA | 0.0 | Sortase A | Exoenzyme | 98.82 | 100.00 | - |
| MCAKGOEL_64 | 15634 | 16365 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 98.77 | 100.00 | WP_011681176 |
| MCAKGOEL_64 | 16366 | 17820 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 98.76 | 100.00 | WP_041827043 |
| MCAKGOEL_64 | 12312 | 13271 | STR_RS05240 | 0.0 | Capsule | Immune modulation | 98.54 | 100.00 | WP_041827042 |
| MCAKGOEL_64 | 15634 | 16365 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.50 | 100.00 | WP_011226048 |
| MCAKGOEL_66 | 52119 | 52912 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 98.36 | 100.25 | - |
| MCAKGOEL_64 | 15634 | 16365 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 98.36 | 100.00 | WP_011227248 |
| MCAKGOEL_64 | 14174 | 14923 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 98.27 | 100.00 | WP_011227246 |
| MCAKGOEL_64 | 16366 | 17820 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 98.21 | 100.00 | WP_011226049 |
| MCAKGOEL_64 | 14188 | 14923 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 98.10 | 99.33 | WP_011226046 |
| MCAKGOEL_80 | 21841 | 23112 | STU_RS16265 | 0.0 | Capsule | Immune modulation | 97.48 | 99.76 | WP_011226331 |
| MCAKGOEL_64 | 16366 | 17820 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 96.65 | 99.79 | WP_011681177 |
| MCAKGOEL_63 | 33277 | 38171 | SAG_RS09105 | 0.0 | Agglutinin receptor | Adherence | 92.87 | 99.98 | WP_000167699 |
| MCAKGOEL_63 | 33277 | 38219 | SSU98_0978 | 0.0 | Agglutinin receptor | Adherence | 92.82 | 99.78 | YP_001200536 |
| MCAKGOEL_63 | 33277 | 38219 | SSU05_0965 | 0.0 | Agglutinin receptor | Adherence | 92.80 | 99.78 | YP_001198331 |
| MCAKGOEL_64 | 14933 | 15625 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 89.90 | 100.00 | WP_011681175 |
| MCAKGOEL_64 | 14933 | 15625 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 89.75 | 100.00 | WP_011226047 |
| MCAKGOEL_64 | 14933 | 15625 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 89.47 | 100.00 | WP_011227247 |
| MCAKGOEL_103 | 96831 | 98134 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.10 | 99.46 | WP_000022832 |
| MCAKGOEL_57 | 14329 | 15339 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.54 | 99.41 | WP_002986042 |
| MCAKGOEL_79 | 4783 | 6066 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.73 | 99.77 | WP_000107753 |
| MCAKGOEL_45 | 21365 | 22411 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MCAKGOEL_46 | 18065 | 19048 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.82 | 100.00 | AAK75326 |
| MCAKGOEL_108 | 6707 | 7780 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| MCAKGOEL_63 | 38192 | 33282 | B9H01_RS04765 | 0.0 | glucan-binding protein | 93.40 | 99.63 | AUS90958 |
| MCAKGOEL_103 | 13145 | 14113 | spr0084 | 0.0 | pathogenitcity related | 93.19 | 98.48 | AAK98888 |
| MCAKGOEL_35 | 15566 | 13263 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.97 | 99.22 | AAK74619 |
| MCAKGOEL_33 | 18341 | 19822 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.31 | 100.00 | ABJ54480 |
| MCAKGOEL_65 | 6061 | 8307 | metE | 0.0 | methionine biosynthesis enzymes | 91.72 | 100.00 | AAK74738 |
| MCAKGOEL_68 | 1886 | 888 | recA | 0.0 | DNA recombination and repair | 91.29 | 85.82 | AAL00560 |
| MCAKGOEL_73 | 3364 | 4335 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| MCAKGOEL_19 | 73112 | 74263 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| MCAKGOEL_80 | 4917 | 6905 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.99 | 100.00 | AE014259_2 |
| MCAKGOEL_46 | 1866 | 136 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 88.04 | 100.00 | AAK34199 |
| MCAKGOEL_47 | 69891 | 68413 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.22 | 100.00 | ADE32434 |
| MCAKGOEL_103 | 96831 | 98132 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| MCAKGOEL_47 | 54702 | 52810 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 86.05 | 98.90 | ABP91129 |
| MCAKGOEL_65 | 11232 | 9523 | PGM | 0.0 | phosphoglucomutase | 83.71 | 99.65 | ACH87041 |
| MCAKGOEL_69 | 19095 | 20105 | pdh | 0.0 | pyruvate dehydrogenase | 83.09 | 99.70 | ABP91006 |
| MCAKGOEL_34 | 30230 | 31591 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| MCAKGOEL_58 | 4716 | 6608 | PepO | 0.0 | endopeptidase | 80.19 | 100.00 | ABF32980 |
| MCAKGOEL_103 | 82396 | 83286 | bglB | 1.10e-179 | putative phospho--glucosidase | 88.89 | 99.66 | AAK33487 |
| MCAKGOEL_43 | 43824 | 44762 | SP_0676 | 5.99e-169 | transcription facot | 81.15 | 97.20 | AAK74821 |
| MCAKGOEL_65 | 8499 | 9356 | metF | 1.39e-166 | methionine biosynthesis enzymes | 86.36 | 99.31 | AAK74739 |
| MCAKGOEL_66 | 24438 | 23734 | covR | 1.26e-132 | responder protein | 85.53 | 100.00 | AAK71319 |
| MCAKGOEL_42 | 19723 | 19052 | rr01 | 1.01e-125 | response regulator | 83.93 | 99.56 | CAB54566 |
| MCAKGOEL_66 | 24438 | 23734 | walR | 5.31e-123 | DNA-binding response regulator | 82.13 | 100.00 | ANC99504 |
| MCAKGOEL_50 | 7737 | 7051 | CovR | 1.29e-119 | serves to repress GAS virulence factor-encoding genes | 80.79 | 100.00 | ACE75886 |
| MCAKGOEL_65 | 15186 | 15854 | CiaR | 1.85e-119 | two-component response regulator | 84.31 | 99.55 | AAK74935 |
| MCAKGOEL_65 | 15186 | 15857 | ciaR | 1.82e-117 | two component system response regulator | 82.14 | 99.12 | AIK75708 |
| MCAKGOEL_68 | 612 | 238 | SpxA2 | 8.91e-72 | transcriptional regulator | 91.20 | 94.70 | ERL21461 |
| MCAKGOEL_34 | 18871 | 18470 | SpxA1 | 1.10e-67 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| MCAKGOEL_41 | 25493 | 25206 | spr0479 | 1.31e-48 | essential gene | 85.42 | 98.97 | AAK99283 |
| MCAKGOEL_85 | 18146 | 17892 | spr1327 | 1.11e-45 | essential gene | 95.29 | 100.00 | AAL00131 |
| MCAKGOEL_47 | 10150 | 10413 | spr0175 | 4.62e-42 | pathogenitcity related | 84.09 | 100.00 | AAK98979 |
| MCAKGOEL_47 | 10977 | 11243 | spr0177 | 8.16e-34 | essential gene | 84.27 | 88.12 | AAK98981 |
| MCAKGOEL_79 | 6224 | 6724 | RopE (M5005_Spy_1611) | 1.82e-76 | probable DNA-directed RNA polymerase subunit delta | 81.44 | 87.43 | AAK34603 |
| MCAKGOEL_35 | 15566 | 13269 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.94 | 98.08 | MYN69560 |
| MCAKGOEL_63 | 3569 | 2373 | AUS90997 (B9H01_RS07385) | 0.0 | site-specific integrase | 97.74 | 100.00 | AUS90997 |
| MCAKGOEL_58 | 19188 | 20207 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MCAKGOEL_8 | 1.0 | 0.0 | 1.0 |
| MCAKGOEL_9 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_11 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_14 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_19 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_29 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_33 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_34 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_35 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_37 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_38 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_39 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_40 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_41 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_42 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_43 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_44 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_45 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_46 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_47 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_48 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_49 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_50 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_51 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_53 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_54 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_55 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_57 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_58 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_59 | 1.0 | 0.0 | 1.0 |
| MCAKGOEL_60 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_61 | 1.0 | 0.0 | 1.0 |
| MCAKGOEL_62 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_63 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_64 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_65 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_66 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_67 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_68 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_69 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_71 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_72 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_73 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_74 | 1.0 | 0.0 | 1.0 |
| MCAKGOEL_76 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_77 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_78 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_79 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_80 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_82 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_83 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_85 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_87 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_88 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_89 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_90 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_92 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_95 | 1.0 | 0.0 | 1.0 |
| MCAKGOEL_97 | 1.0 | 0.0 | 1.0 |
| MCAKGOEL_99 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_100 | 1.0 | 0.0 | 1.0 |
| MCAKGOEL_101 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_103 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_106 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_107 | 1.0 | 0.0 | 1.0 |
| MCAKGOEL_108 | 0.0 | 1.0 | 0.0 |
| MCAKGOEL_109 | 1.0 | 0.0 | 1.0 |
| MCAKGOEL_112 | 1.0 | 0.0 | 1.0 |
| MCAKGOEL_113 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)