Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LIGHMBPF_191 | 1 | 772 | repUS73 | 772 / 1101 | 97.93 | CP002654 |
| LIGHMBPF_262 | 4322 | 5090 | rep38 | 771 / 1104 | 93.51 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LIGHMBPF_2 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_3 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_4 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_5 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_6 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_8 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_9 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_11 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_12 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_13 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_14 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_15 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_17 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_18 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_20 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_21 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_22 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_23 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_24 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_25 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_26 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_31 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_32 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_35 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_37 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_38 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_39 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_43 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_44 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_45 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_46 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_50 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_54 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_57 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_58 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_59 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_60 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_64 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_66 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_67 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_68 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_69 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_70 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_71 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_74 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_75 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_77 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_78 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_80 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_82 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_88 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_99 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_100 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_110 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_113 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_115 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_125 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_130 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_131 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_132 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_134 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_135 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_136 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_138 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_139 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_141 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_142 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_143 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_144 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_145 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_148 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_150 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_152 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_155 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_156 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_157 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_161 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_164 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_167 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_169 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_171 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_173 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_174 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_175 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_176 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_178 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_179 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_180 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_182 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_187 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_188 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_191 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_196 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_197 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_204 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_205 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_207 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_218 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_219 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_227 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_229 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_234 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_241 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_242 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_243 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_244 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_245 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_246 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_247 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_248 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_249 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_250 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_252 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_253 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_254 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_255 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_256 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_257 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_259 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_261 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_262 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_263 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_264 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_265 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_266 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_267 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_268 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_270 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_271 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_272 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_273 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_274 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_275 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_276 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_277 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_278 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_279 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_280 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_281 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_282 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_283 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_284 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_285 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_286 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_287 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_288 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_289 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_290 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_291 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_292 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_294 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_295 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_296 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_297 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_298 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_299 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_300 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_301 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_302 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_303 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_304 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_305 | 0.0 | 1.0 | 0.0 |
| LIGHMBPF_306 | 1.0 | 0.0 | 1.0 |
| LIGHMBPF_308 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LIGHMBPF_71 | 44657 | 73463 | False | Myoviridae | VOG7011, VOG4705, VOG8608, VOG0979, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG8263, VOG10762, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG5027, VOG1912, VOG7407, VOG0796 |
| LIGHMBPF_71 | 84569 | 86222 | False | Unknown | VOG10149, VOG9667, VOG8520 |
Phigaro v2.4.0 (Database: Jan. 2024 release)