Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PNNMCJBA_138 | 27848 | 27144 | WalR | 5.50e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PNNMCJBA_19 | 6954 | 7148 | CspR | 3.89e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PNNMCJBA_19 | 6954 | 7151 | CspA | 5.97e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PNNMCJBA_6 | 7571 | 8506 | rep28 | 936 / 936 | 97.97 | CP005948 |
| PNNMCJBA_139 | 191 | 1143 | repUS64 | 955 / 954 | 87.23 | JN601038 |
| PNNMCJBA_52 | 6298 | 7258 | repUS73 | 977 / 1101 | 81.68 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNNMCJBA_1 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_2 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_3 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_4 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_5 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_6 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_7 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_8 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_9 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_10 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_11 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_12 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_13 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_14 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_15 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_16 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_17 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_18 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_19 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_20 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_22 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_24 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_25 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_26 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_27 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_28 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_29 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_31 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_35 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_36 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_37 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_38 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_39 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_40 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_42 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_43 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_44 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_45 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_46 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_47 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_48 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_51 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_52 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_53 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_54 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_55 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_56 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_57 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_60 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_61 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_62 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_64 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_69 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_70 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_72 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_75 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_78 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_79 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_81 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_84 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_89 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_92 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_100 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_102 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_104 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_106 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_108 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_116 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_126 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_127 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_131 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_133 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_134 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_135 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_136 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_138 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_139 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_140 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_141 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_142 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_143 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_144 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_145 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_147 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_148 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_150 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_151 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_152 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_153 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_154 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_156 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_157 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_158 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_159 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_160 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_161 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_162 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_163 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_165 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_166 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_168 | 1.0 | 0.0 | 1.0 |
| PNNMCJBA_169 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_170 | 0.0 | 1.0 | 0.0 |
| PNNMCJBA_171 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PNNMCJBA_145 | 21094 | 32027 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| PNNMCJBA_156 | 76094 | 82370 | False | Siphoviridae | VOG0181, VOG5073, VOG0685, VOG0322, VOG6545, VOG0514, VOG8647, VOG0189 |
Phigaro v2.4.0 (Database: Jan. 2024 release)