Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PPBJJAML_56 | 45383 | 44679 | WalR | 6.02e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PPBJJAML_97 | 174595 | 174401 | CspR | 8.01e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PPBJJAML_97 | 174595 | 174398 | CspA | 1.23e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PPBJJAML_38 | 6368 | 7303 | rep28 | 937 / 936 | 81.96 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PPBJJAML_2 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_5 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_6 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_7 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_12 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_14 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_15 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_18 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_19 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_20 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_21 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_26 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_28 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_30 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_35 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_37 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_38 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_40 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_41 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_44 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_45 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_46 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_47 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_48 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_49 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_50 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_51 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_52 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_53 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_54 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_55 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_56 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_57 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_58 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_59 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_60 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_61 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_62 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_63 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_64 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_65 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_66 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_67 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_68 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_69 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_70 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_71 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_72 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_73 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_74 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_75 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_76 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_77 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_78 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_79 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_80 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_81 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_82 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_84 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_85 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_86 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_87 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_89 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_91 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_92 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_93 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_94 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_95 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_96 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_97 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_98 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_99 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_100 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_101 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_103 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_104 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_107 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_110 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_112 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_113 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_114 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_115 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_116 | 1.0 | 0.0 | 1.0 |
| PPBJJAML_118 | 0.0 | 1.0 | 0.0 |
| PPBJJAML_120 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PPBJJAML_18 | 49233 | 76280 | False | Siphoviridae | VOG4636, VOG0189, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4686, VOG4605, VOG4599, VOG10957 |
| PPBJJAML_26 | 16941 | 50513 | False | Siphoviridae | VOG0181, VOG7298, VOG9708, VOG0283, VOG5046, VOG0189, VOG4693, VOG0198, VOG0418, VOG0686, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)