Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NLEFIACL_57 | 43442 | 42738 | WalR | 1.46e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NLEFIACL_11 | 7035 | 7229 | CspR | 4.23e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NLEFIACL_11 | 7035 | 7232 | CspA | 6.49e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NLEFIACL_1 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_2 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_3 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_4 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_5 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_6 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_7 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_8 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_9 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_10 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_11 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_12 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_13 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_14 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_15 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_16 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_17 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_18 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_19 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_20 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_21 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_22 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_23 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_25 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_26 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_27 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_28 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_30 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_31 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_33 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_35 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_41 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_48 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_50 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_52 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_53 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_54 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_55 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_57 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_59 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_61 | 1.0 | 0.0 | 1.0 |
| NLEFIACL_62 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_63 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_64 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_65 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_66 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_67 | 0.0 | 1.0 | 0.0 |
| NLEFIACL_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NLEFIACL_12 | 67030 | 97208 | False | Siphoviridae | VOG3549, VOG0650, VOG1309, VOG0186, VOG4855, VOG0189, VOG4693, VOG1297, VOG6970, VOG0044, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG0753 |
Phigaro v2.4.0 (Database: Jan. 2024 release)