Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LPNMFJAM_132 | 10940 | 10746 | CspR | 8.40e-29 | cold shock protein | 83.08 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPNMFJAM_3 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_4 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_6 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_8 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_9 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_10 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_11 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_12 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_13 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_14 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_15 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_16 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_18 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_19 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_20 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_21 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_23 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_25 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_28 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_29 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_34 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_35 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_37 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_38 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_41 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_42 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_44 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_47 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_48 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_49 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_53 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_56 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_60 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_62 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_64 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_68 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_69 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_72 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_75 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_76 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_77 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_81 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_83 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_86 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_88 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_91 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_94 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_99 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_100 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_103 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_105 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_106 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_112 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_113 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_114 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_116 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_117 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_118 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_121 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_122 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_123 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_125 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_126 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_127 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_128 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_129 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_131 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_132 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_134 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_135 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_136 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_137 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_138 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_139 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_140 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_141 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_142 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_143 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_144 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_145 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_146 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_147 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_149 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_152 | 0.0 | 1.0 | 0.0 |
| LPNMFJAM_153 | 1.0 | 0.0 | 1.0 |
| LPNMFJAM_154 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPNMFJAM_23 | 15739 | 30668 | False | Myoviridae | VOG0189, VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG6431 |
Phigaro v2.4.0 (Database: Jan. 2024 release)