Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PAOEKMLI_172 | 14150 | 13953 | CspA | 2.74e-30 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| PAOEKMLI_172 | 14150 | 13956 | CspR | 4.97e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAOEKMLI_1 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_2 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_3 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_4 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_5 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_7 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_10 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_11 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_13 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_14 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_16 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_17 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_18 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_20 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_22 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_33 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_34 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_39 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_42 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_43 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_44 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_45 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_46 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_47 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_50 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_51 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_55 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_58 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_65 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_67 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_68 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_76 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_85 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_87 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_89 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_90 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_91 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_92 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_93 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_94 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_97 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_102 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_103 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_104 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_105 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_108 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_109 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_110 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_111 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_113 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_116 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_117 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_120 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_121 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_125 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_131 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_132 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_134 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_136 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_141 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_152 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_153 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_154 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_163 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_169 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_170 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_171 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_172 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_173 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_174 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_175 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_177 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_179 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_180 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_181 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_182 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_183 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_184 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_185 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_186 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_189 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_190 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_191 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_192 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_193 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_195 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_196 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_197 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_198 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_199 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_200 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_202 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_203 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_204 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_205 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_207 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_209 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_210 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_211 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_212 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_213 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_214 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_215 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_216 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_217 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_218 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_220 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_221 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_222 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_223 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_225 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_226 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_227 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_228 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_229 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_230 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_231 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_232 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_237 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_240 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_241 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_242 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_244 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_245 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_246 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_249 | 0.0 | 1.0 | 0.0 |
| PAOEKMLI_250 | 1.0 | 0.0 | 1.0 |
| PAOEKMLI_251 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAOEKMLI_85 | 6623 | 10060 | False | Unknown | VOG2228, VOG4552, VOG6823 |
| PAOEKMLI_182 | 6218 | 16160 | False | Myoviridae | VOG0226, VOG0205, VOG0384, VOG0382, VOG0083, VOG5235 |
| PAOEKMLI_185 | 13301 | 43296 | True | Siphoviridae | VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG8909, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG0221, VOG0221, VOG0221, VOG4567 |
Phigaro v2.4.0 (Database: Jan. 2024 release)