Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ACCDGNFA_32 | 17493 | 18197 | WalR | 3.25e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| ACCDGNFA_70 | 23238 | 23041 | CspR | 5.65e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ACCDGNFA_1 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_4 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_5 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_8 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_9 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_10 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_12 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_16 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_17 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_19 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_21 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_23 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_25 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_26 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_28 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_29 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_30 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_32 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_34 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_36 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_38 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_39 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_40 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_41 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_42 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_43 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_44 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_45 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_46 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_47 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_48 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_49 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_50 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_51 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_52 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_53 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_54 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_55 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_56 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_57 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_58 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_59 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_60 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_61 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_62 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_63 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_64 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_65 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_66 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_67 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_68 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_69 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_70 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_71 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_72 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_74 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_76 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_77 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_78 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_79 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_80 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_81 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_82 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_84 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_85 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_86 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_87 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_88 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_89 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_90 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_91 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_92 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_93 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_94 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_95 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_96 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_97 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_99 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_103 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_104 | 0.0 | 1.0 | 0.0 |
| ACCDGNFA_106 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_108 | 1.0 | 0.0 | 1.0 |
| ACCDGNFA_109 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ACCDGNFA_34 | 20414 | 41601 | False | Siphoviridae | VOG3795, VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG9975, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581 |
| ACCDGNFA_59 | 34 | 19542 | False | Siphoviridae | VOG5616, VOG1300, VOG1183, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG5601, VOG9763, VOG0701, VOG4705, VOG4605, VOG4599, VOG6455, VOG7896, VOG7888, VOG0054, VOG4918 |
| ACCDGNFA_82 | 5119 | 19211 | False | Siphoviridae | VOG3304, VOG0862, VOG8520, VOG5353, VOG7236, VOG10397, VOG0707, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG6394, VOG4548, VOG3777, VOG6545, VOG4606, VOG0327, VOG9759, VOG0152, VOG3643, VOG9671 |
| ACCDGNFA_109 | 10706 | 23178 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG4553, VOG0204 |
Phigaro v2.4.0 (Database: Jan. 2024 release)