Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NFDCOLJC_10 | 71322 | 72026 | WalR | 1.16e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NFDCOLJC_67 | 358 | 555 | CspR | 5.66e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NFDCOLJC_55 | 2662 | 3696 | rep38 | 1046 / 1104 | 82.70 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NFDCOLJC_1 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_2 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_3 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_4 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_5 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_6 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_7 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_8 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_9 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_10 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_11 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_15 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_18 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_19 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_20 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_23 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_25 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_28 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_37 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_38 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_39 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_40 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_41 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_42 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_43 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_44 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_45 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_46 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_47 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_48 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_49 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_50 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_51 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_52 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_53 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_54 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_55 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_56 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_57 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_58 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_59 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_60 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_61 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_62 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_63 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_64 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_65 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_67 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_68 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_69 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_71 | 1.0 | 0.0 | 1.0 |
| NFDCOLJC_74 | 0.0 | 1.0 | 0.0 |
| NFDCOLJC_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NFDCOLJC_60 | 2595 | 24454 | False | Siphoviridae | VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG0221 |
| NFDCOLJC_67 | 21524 | 56349 | False | Siphoviridae | VOG8241, VOG1309, VOG0186, VOG4566, VOG0226, VOG11003, VOG9860, VOG6623, VOG4693, VOG4567, VOG0195, VOG0275, VOG4643, VOG6815, VOG0198, VOG4570, VOG4549, VOG0796, VOG4544, VOG0691, VOG0692, VOG5616, VOG1183, VOG4555, VOG4711, VOG0695, VOG0696, VOG0697, VOG0698, VOG5587, VOG5601, VOG10044, VOG0701, VOG4705, VOG4605, VOG4599, VOG4705, VOG1637, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)