Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LCCNMNKB_24 | 150348 | 149644 | WalR | 5.34e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LCCNMNKB_6 | 25930 | 25733 | CspR | 4.25e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCCNMNKB_4 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_5 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_6 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_7 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_8 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_9 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_10 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_11 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_12 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_13 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_14 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_15 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_16 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_17 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_18 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_19 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_20 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_21 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_22 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_23 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_24 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_25 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_26 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_27 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_28 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_29 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_30 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_31 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_33 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_34 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_35 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_36 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_37 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_38 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_39 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_40 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_42 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_43 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_44 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_45 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_46 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_47 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_48 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_49 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_50 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_51 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_52 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_53 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_55 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_56 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_57 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_59 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_60 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_62 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_63 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_66 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_67 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_71 | 0.0 | 1.0 | 0.0 |
| LCCNMNKB_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCCNMNKB_6 | 1613 | 5176 | False | Unknown | VOG0226, VOG4566, VOG0186, VOG1309 |
| LCCNMNKB_33 | 191 | 20664 | False | Siphoviridae | VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG10904, VOG4570 |
Phigaro v2.4.0 (Database: Jan. 2024 release)