Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DBNCECKA_41 | 283810 | 284514 | WalR | 4.51e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| DBNCECKA_40 | 29074 | 29271 | CspR | 4.65e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DBNCECKA_1 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_2 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_3 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_4 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_5 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_6 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_7 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_8 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_9 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_10 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_11 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_12 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_13 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_14 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_15 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_16 | 1.0 | 0.0 | 1.0 |
| DBNCECKA_17 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_18 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_19 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_20 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_21 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_22 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_23 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_25 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_26 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_27 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_28 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_30 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_31 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_33 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_34 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_36 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_37 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_38 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_39 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_40 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_41 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_42 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_43 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_44 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_45 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_47 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_48 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_49 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_51 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_52 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_54 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_55 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_57 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_58 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_61 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_67 | 0.0 | 1.0 | 0.0 |
| DBNCECKA_71 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DBNCECKA_44 | 2212 | 37361 | False | Siphoviridae | VOG0054, VOG7888, VOG4705, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG10904, VOG4570, VOG3691, VOG0198, VOG3643, VOG0152, VOG0195, VOG6238, VOG4693, VOG6623, VOG0189, VOG4566, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG3622 |
Phigaro v2.4.0 (Database: Jan. 2024 release)