Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FGHIFNKO_31 | 82729 | 83433 | WalR | 2.23e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| FGHIFNKO_51 | 9578 | 9775 | CspR | 2.64e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FGHIFNKO_1 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_2 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_3 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_4 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_5 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_6 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_7 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_8 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_9 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_10 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_11 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_12 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_13 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_14 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_15 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_16 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_17 | 1.0 | 0.0 | 1.0 |
| FGHIFNKO_18 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_20 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_21 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_22 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_23 | 1.0 | 0.0 | 1.0 |
| FGHIFNKO_24 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_25 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_27 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_29 | 1.0 | 0.0 | 1.0 |
| FGHIFNKO_31 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_33 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_34 | 1.0 | 0.0 | 1.0 |
| FGHIFNKO_35 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_38 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_40 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_41 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_42 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_43 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_44 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_45 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_46 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_47 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_48 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_49 | 1.0 | 0.0 | 1.0 |
| FGHIFNKO_50 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_51 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_52 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_53 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_54 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_55 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_56 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_57 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_58 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_59 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_60 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_61 | 1.0 | 0.0 | 1.0 |
| FGHIFNKO_62 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_63 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_64 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_65 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_66 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_67 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_68 | 1.0 | 0.0 | 1.0 |
| FGHIFNKO_69 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_70 | 1.0 | 0.0 | 1.0 |
| FGHIFNKO_71 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_72 | 0.0 | 1.0 | 0.0 |
| FGHIFNKO_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FGHIFNKO_31 | 6039 | 9543 | False | Unknown | VOG4556, VOG5051, VOG4544 |
| FGHIFNKO_51 | 31706 | 46743 | False | Siphoviridae | VOG8241, VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG11003, VOG9860, VOG6623, VOG4693, VOG9741, VOG9759, VOG0152, VOG6815, VOG0198, VOG7136, VOG4570, VOG4549, VOG3699, VOG4544 |
| FGHIFNKO_52 | 61 | 15210 | False | Siphoviridae | VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG1637, VOG0703, VOG0638 |
Phigaro v2.4.0 (Database: Jan. 2024 release)