Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IFELIBCA_4 | 55278 | 54574 | WalR | 1.16e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| IFELIBCA_38 | 10677 | 10480 | CspR | 6.06e-34 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IFELIBCA_1 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_2 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_3 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_4 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_5 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_6 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_7 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_8 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_9 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_10 | 1.0 | 0.0 | 1.0 |
| IFELIBCA_12 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_13 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_14 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_15 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_16 | 1.0 | 0.0 | 1.0 |
| IFELIBCA_17 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_18 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_19 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_20 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_22 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_23 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_24 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_25 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_26 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_27 | 1.0 | 0.0 | 1.0 |
| IFELIBCA_28 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_29 | 1.0 | 0.0 | 1.0 |
| IFELIBCA_30 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_31 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_32 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_33 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_34 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_35 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_36 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_37 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_38 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_39 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_40 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_41 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_42 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_43 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_44 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_45 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_46 | 1.0 | 0.0 | 1.0 |
| IFELIBCA_47 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_48 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_49 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_50 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_53 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_54 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_55 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_56 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_57 | 1.0 | 0.0 | 1.0 |
| IFELIBCA_61 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_66 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_72 | 0.0 | 1.0 | 0.0 |
| IFELIBCA_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IFELIBCA_8 | 86467 | 125836 | False | Siphoviridae | VOG4918, VOG0054, VOG7888, VOG4705, VOG4599, VOG4605, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG4549, VOG10904, VOG4570, VOG0198, VOG3643, VOG4643, VOG0275, VOG0195, VOG9759, VOG4693, VOG7735, VOG0025, VOG4799, VOG0226, VOG0514, VOG0283, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG3459, VOG3711, VOG4552, VOG5353, VOG8520, VOG0862 |
| IFELIBCA_34 | 10262 | 19907 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)