Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CLKHPKPK_16 | 55282 | 54578 | WalR | 1.16e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CLKHPKPK_44 | 375 | 572 | CspR | 1.88e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CLKHPKPK_2 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_3 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_4 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_5 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_7 | 1.0 | 0.0 | 1.0 |
| CLKHPKPK_8 | 1.0 | 0.0 | 1.0 |
| CLKHPKPK_9 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_10 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_12 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_13 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_14 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_15 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_16 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_17 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_18 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_19 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_20 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_21 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_22 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_23 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_24 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_25 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_26 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_27 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_28 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_29 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_30 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_31 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_32 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_33 | 1.0 | 0.0 | 1.0 |
| CLKHPKPK_34 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_35 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_36 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_38 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_39 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_40 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_41 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_42 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_43 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_44 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_45 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_46 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_47 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_50 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_52 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_54 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_57 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_58 | 0.0 | 1.0 | 0.0 |
| CLKHPKPK_61 | 1.0 | 0.0 | 1.0 |
| CLKHPKPK_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CLKHPKPK_3 | 2940 | 42309 | False | Siphoviridae | VOG8492, VOG0862, VOG8520, VOG5353, VOG4552, VOG3711, VOG3459, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0283, VOG0514, VOG0226, VOG4799, VOG0025, VOG7735, VOG4693, VOG9759, VOG0195, VOG0275, VOG4643, VOG3643, VOG0198, VOG4570, VOG10904, VOG4549, VOG1345, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG4605, VOG4599, VOG4705, VOG7888, VOG0054 |
| CLKHPKPK_50 | 10268 | 19910 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)