Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KPKBOJOI_19 | 79875 | 79171 | WalR | 2.23e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| KPKBOJOI_40 | 9584 | 9781 | CspR | 2.64e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KPKBOJOI_3 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_5 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_7 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_9 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_10 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_12 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_13 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_14 | 1.0 | 0.0 | 1.0 |
| KPKBOJOI_15 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_16 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_17 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_18 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_19 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_21 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_22 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_23 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_24 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_25 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_26 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_27 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_28 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_29 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_30 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_31 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_32 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_33 | 1.0 | 0.0 | 1.0 |
| KPKBOJOI_34 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_35 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_36 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_37 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_38 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_39 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_40 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_41 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_42 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_43 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_44 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_46 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_47 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_48 | 1.0 | 0.0 | 1.0 |
| KPKBOJOI_49 | 1.0 | 0.0 | 1.0 |
| KPKBOJOI_50 | 1.0 | 0.0 | 1.0 |
| KPKBOJOI_51 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_52 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_53 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_54 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_55 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_56 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_57 | 1.0 | 0.0 | 1.0 |
| KPKBOJOI_58 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_59 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_61 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_64 | 1.0 | 0.0 | 1.0 |
| KPKBOJOI_65 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_66 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_69 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_70 | 0.0 | 1.0 | 0.0 |
| KPKBOJOI_71 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KPKBOJOI_19 | 153061 | 156565 | False | Unknown | VOG4581, VOG4544, VOG5051 |
| KPKBOJOI_40 | 31712 | 46749 | False | Siphoviridae | VOG8241, VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG11003, VOG9860, VOG6623, VOG4693, VOG9741, VOG9759, VOG0152, VOG6815, VOG0198, VOG7136, VOG4570, VOG4549, VOG3699, VOG4544 |
Phigaro v2.4.0 (Database: Jan. 2024 release)