Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCEACPMG_159 | 50095 | 49391 | WalR | 6.84e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HCEACPMG_119 | 318 | 515 | CspR | 5.21e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HCEACPMG_153 | 1093 | 2017 | repUS64 | 930 / 954 | 85.48 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCEACPMG_1 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_2 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_3 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_4 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_5 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_6 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_7 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_8 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_9 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_10 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_11 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_12 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_13 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_14 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_15 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_16 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_17 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_18 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_19 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_20 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_22 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_24 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_27 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_28 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_29 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_31 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_33 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_35 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_37 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_39 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_43 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_45 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_46 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_48 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_53 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_54 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_56 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_59 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_62 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_64 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_68 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_73 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_77 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_78 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_79 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_80 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_81 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_82 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_83 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_84 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_85 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_86 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_87 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_88 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_89 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_90 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_91 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_92 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_93 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_94 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_95 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_96 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_97 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_98 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_99 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_100 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_101 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_102 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_103 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_105 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_109 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_111 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_112 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_114 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_117 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_118 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_119 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_120 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_121 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_122 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_123 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_124 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_125 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_126 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_127 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_128 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_129 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_130 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_131 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_132 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_133 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_134 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_135 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_136 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_137 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_138 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_139 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_140 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_141 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_142 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_143 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_144 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_145 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_146 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_147 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_148 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_149 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_150 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_151 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_152 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_153 | 1.0 | 0.0 | 1.0 |
| HCEACPMG_155 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_156 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_157 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_158 | 0.0 | 1.0 | 0.0 |
| HCEACPMG_159 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCEACPMG_80 | 11561 | 33908 | False | Siphoviridae | VOG0249, VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG1345, VOG4549 |
Phigaro v2.4.0 (Database: Jan. 2024 release)