Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGEEOPHG_167 | 14412 | 14606 | CspA | 3.63e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGEEOPHG_2 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_3 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_4 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_5 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_8 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_10 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_11 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_12 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_13 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_14 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_17 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_18 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_19 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_20 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_21 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_22 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_23 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_24 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_25 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_27 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_28 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_29 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_30 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_31 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_32 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_33 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_35 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_36 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_37 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_38 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_39 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_42 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_44 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_45 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_48 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_50 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_52 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_53 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_54 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_55 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_58 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_59 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_61 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_63 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_68 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_71 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_74 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_79 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_80 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_82 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_83 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_84 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_85 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_87 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_88 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_89 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_90 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_91 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_95 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_97 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_98 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_99 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_106 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_107 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_108 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_113 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_117 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_118 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_125 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_134 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_144 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_145 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_146 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_147 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_148 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_149 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_150 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_151 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_152 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_153 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_154 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_155 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_156 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_157 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_158 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_159 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_160 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_161 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_162 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_163 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_164 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_165 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_166 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_167 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_168 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_169 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_170 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_171 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_172 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_173 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_174 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_175 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_177 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_180 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_181 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_182 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_183 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_184 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_185 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_186 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_187 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_188 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_190 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_193 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_194 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_195 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_196 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_197 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_198 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_199 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_200 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_202 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_203 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_204 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_205 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_206 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_207 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_209 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_210 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_211 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_212 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_213 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_214 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_215 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_216 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_217 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_218 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_219 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_220 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_221 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_222 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_223 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_224 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_225 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_226 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_227 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_228 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_229 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_232 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_233 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_234 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_235 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_236 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_237 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_238 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_239 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_240 | 0.0 | 1.0 | 0.0 |
| NGEEOPHG_241 | 1.0 | 0.0 | 1.0 |
| NGEEOPHG_242 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGEEOPHG_37 | 25397 | 54507 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG6163, VOG0801, VOG3462, VOG10972, VOG1050, VOG9997, VOG4856, VOG4334, VOG4705, VOG9998, VOG1637 |
| NGEEOPHG_157 | 8669 | 30014 | False | Siphoviridae | VOG7896, VOG4334, VOG10593, VOG5601, VOG4687, VOG3462, VOG0801, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG4711, VOG10914, VOG5822, VOG6028, VOG10904, VOG4564, VOG0720, VOG7734, VOG0796 |
| NGEEOPHG_196 | 8444 | 15857 | False | Unknown | VOG1026, VOG6246, VOG6524, VOG6031, VOG5721 |
| NGEEOPHG_196 | 53571 | 66167 | False | Siphoviridae | VOG0377, VOG4593, VOG6091, VOG1344, VOG10904, VOG4549, VOG9060, VOG0787, VOG1638 |
| NGEEOPHG_198 | 9147 | 12751 | False | Myoviridae | VOG0384, VOG10104 |
| NGEEOPHG_212 | 11376 | 25430 | True | Siphoviridae | VOG0275, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG0221, VOG0221, VOG9671, VOG0350, VOG1844 |
| NGEEOPHG_238 | 2022 | 11202 | False | Siphoviridae | VOG6542, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207 |
Phigaro v2.4.0 (Database: Jan. 2024 release)