Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LFFEGMHO_6 | 14412 | 14606 | CspA | 3.63e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFFEGMHO_1 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_2 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_4 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_5 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_6 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_7 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_8 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_9 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_10 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_11 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_12 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_13 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_14 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_15 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_16 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_19 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_20 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_21 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_22 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_23 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_24 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_25 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_26 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_27 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_29 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_31 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_32 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_33 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_34 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_35 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_36 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_37 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_38 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_39 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_40 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_41 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_43 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_44 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_46 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_47 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_49 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_51 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_52 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_53 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_54 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_55 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_56 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_58 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_59 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_60 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_61 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_63 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_64 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_65 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_66 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_67 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_68 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_69 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_70 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_71 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_73 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_75 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_76 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_77 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_78 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_79 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_81 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_83 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_84 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_85 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_86 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_87 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_88 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_89 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_90 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_91 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_92 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_93 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_94 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_97 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_98 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_100 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_101 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_103 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_104 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_105 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_107 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_108 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_109 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_110 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_115 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_116 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_118 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_119 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_122 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_124 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_126 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_127 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_128 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_130 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_135 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_136 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_139 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_141 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_142 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_145 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_146 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_151 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_153 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_154 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_161 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_162 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_166 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_167 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_172 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_180 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_181 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_184 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_186 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_187 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_188 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_189 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_190 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_191 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_192 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_193 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_196 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_198 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_199 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_200 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_204 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_206 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_208 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_209 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_210 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_211 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_212 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_213 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_215 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_216 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_217 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_218 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_219 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_220 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_221 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_222 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_223 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_224 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_226 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_227 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_228 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_229 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_230 | 1.0 | 0.0 | 1.0 |
| LFFEGMHO_231 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_232 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_233 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_236 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_237 | 0.0 | 1.0 | 0.0 |
| LFFEGMHO_238 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFFEGMHO_26 | 8669 | 30014 | False | Siphoviridae | VOG7896, VOG4334, VOG10593, VOG5601, VOG4687, VOG3462, VOG0801, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG4711, VOG10914, VOG5822, VOG6028, VOG10904, VOG4564, VOG0720, VOG7734, VOG0796 |
| LFFEGMHO_34 | 14273 | 28327 | True | Siphoviridae | VOG4571, VOG1844, VOG0350, VOG9671, VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG0275 |
| LFFEGMHO_54 | 83612 | 87216 | False | Unknown | VOG0226, VOG10104 |
| LFFEGMHO_116 | 33578 | 62688 | False | Siphoviridae | VOG0054, VOG1637, VOG9998, VOG4705, VOG4334, VOG4856, VOG9997, VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0866 |
| LFFEGMHO_186 | 15434 | 28030 | False | Siphoviridae | VOG6394, VOG1638, VOG0787, VOG9060, VOG4549, VOG10904, VOG1344, VOG6091, VOG4593, VOG0377 |
| LFFEGMHO_226 | 2022 | 11202 | False | Siphoviridae | VOG6542, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207 |
Phigaro v2.4.0 (Database: Jan. 2024 release)