Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AGPKFCIL_98 | 25475 | 25281 | CspA | 5.74e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AGPKFCIL_2 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_4 | 1.0 | 0.0 | 1.0 |
| AGPKFCIL_7 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_17 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_22 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_23 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_24 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_25 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_26 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_27 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_28 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_29 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_30 | 1.0 | 0.0 | 1.0 |
| AGPKFCIL_31 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_32 | 1.0 | 0.0 | 1.0 |
| AGPKFCIL_33 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_34 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_35 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_36 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_37 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_38 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_39 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_40 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_41 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_42 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_43 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_45 | 1.0 | 0.0 | 1.0 |
| AGPKFCIL_46 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_48 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_50 | 1.0 | 0.0 | 1.0 |
| AGPKFCIL_53 | 1.0 | 0.0 | 1.0 |
| AGPKFCIL_54 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_55 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_58 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_63 | 1.0 | 0.0 | 1.0 |
| AGPKFCIL_65 | 1.0 | 0.0 | 1.0 |
| AGPKFCIL_67 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_68 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_70 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_74 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_79 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_80 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_81 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_82 | 1.0 | 0.0 | 1.0 |
| AGPKFCIL_84 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_85 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_86 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_87 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_88 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_89 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_90 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_91 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_92 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_93 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_94 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_95 | 0.0 | 1.0 | 0.0 |
| AGPKFCIL_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AGPKFCIL_22 | 7361 | 43168 | False | Siphoviridae | VOG8917, VOG4705, VOG4660, VOG4555, VOG3462, VOG0801, VOG3636, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG4711, VOG10914, VOG6028, VOG4564, VOG0720, VOG10227, VOG0058, VOG10904, VOG3699, VOG0195, VOG0866, VOG8453, VOG3477, VOG0198, VOG3468, VOG6214, VOG0536, VOG0189, VOG8647, VOG0226, VOG0283, VOG9708, VOG11003, VOG6450, VOG0979, VOG1073, VOG4552, VOG0052, VOG8520, VOG0862 |
Phigaro v2.4.0 (Database: Jan. 2024 release)