Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LBGKAHDG_15 | 120071 | 120775 | WalR | 1.11e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| LBGKAHDG_18 | 57583 | 57389 | CspR | 2.85e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LBGKAHDG_18 | 57583 | 57386 | CspA | 4.37e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBGKAHDG_1 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_2 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_3 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_4 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_5 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_6 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_8 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_9 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_10 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_11 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_12 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_13 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_14 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_15 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_16 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_17 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_18 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_19 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_20 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_21 | 1.0 | 0.0 | 1.0 |
| LBGKAHDG_23 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_25 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_26 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_27 | 1.0 | 0.0 | 1.0 |
| LBGKAHDG_28 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_29 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_30 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_31 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_32 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_33 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_34 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_35 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_36 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_37 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_38 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_39 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_41 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_42 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_43 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_45 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_46 | 1.0 | 0.0 | 1.0 |
| LBGKAHDG_47 | 1.0 | 0.0 | 1.0 |
| LBGKAHDG_48 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_49 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_50 | 1.0 | 0.0 | 1.0 |
| LBGKAHDG_52 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_63 | 0.0 | 1.0 | 0.0 |
| LBGKAHDG_65 | 1.0 | 0.0 | 1.0 |
| LBGKAHDG_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBGKAHDG_15 | 108289 | 118315 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
| LBGKAHDG_20 | 6466 | 36061 | False | Siphoviridae | VOG0054, VOG0753, VOG4918, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4599, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG3699, VOG2124, VOG6495, VOG0198, VOG6005, VOG0189, VOG5046, VOG6545, VOG0322, VOG0535 |
| LBGKAHDG_35 | 47786 | 73064 | False | Siphoviridae | VOG0181, VOG7298, VOG1309, VOG0186, VOG4566, VOG4693, VOG0198, VOG0788, VOG0638, VOG0796, VOG10227, VOG0720, VOG4564, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0799, VOG0725, VOG1323, VOG4545, VOG0801, VOG3462 |
| LBGKAHDG_63 | 324871 | 352110 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG4566 |
Phigaro v2.4.0 (Database: Jan. 2024 release)