Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGBCAPOO_144 | 681 | 2600 | tet(W) | ARO:3000194 | tet(W) | 97.18 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GGBCAPOO_144 | 681 | 2600 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.11 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGBCAPOO_144 | 684 | 2600 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GGBCAPOO_19 | 1651 | 1457 | CspA | 2.30e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGBCAPOO_1 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_2 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_3 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_4 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_5 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_6 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_7 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_8 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_9 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_10 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_12 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_13 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_15 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_16 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_17 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_18 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_19 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_20 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_21 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_22 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_23 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_24 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_25 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_26 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_27 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_28 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_29 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_30 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_31 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_33 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_34 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_37 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_38 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_39 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_41 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_42 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_43 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_44 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_45 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_46 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_48 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_51 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_55 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_58 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_63 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_64 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_65 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_68 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_72 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_73 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_76 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_79 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_80 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_82 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_87 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_90 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_94 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_96 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_100 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_101 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_104 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_105 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_107 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_110 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_112 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_114 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_116 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_117 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_118 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_119 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_120 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_121 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_122 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_123 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_124 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_125 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_126 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_127 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_128 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_129 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_130 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_131 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_132 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_133 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_134 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_135 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_136 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_137 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_138 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_139 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_140 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_141 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_142 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_143 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_144 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_145 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_146 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_147 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_148 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_149 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_150 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_152 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_153 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_154 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_155 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_157 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_158 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_159 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_160 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_161 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_162 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_163 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_164 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_165 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_166 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_167 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_168 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_170 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_171 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_172 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_173 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_174 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_176 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_177 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_178 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_179 | 1.0 | 0.0 | 1.0 |
| GGBCAPOO_180 | 0.0 | 1.0 | 0.0 |
| GGBCAPOO_183 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GGBCAPOO_112 | 69604 | 73924 | False | Siphoviridae | VOG6827, VOG4602, VOG8520 |
| GGBCAPOO_142 | 5279 | 18476 | False | Siphoviridae | VOG4705, VOG6550, VOG5601, VOG4612, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG1353 |
Phigaro v2.4.0 (Database: Jan. 2024 release)