Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GMDKHDHI_125 | 14096 | 14290 | CspA | 2.30e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GMDKHDHI_1 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_2 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_4 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_5 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_6 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_7 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_9 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_10 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_11 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_12 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_13 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_15 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_16 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_17 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_19 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_20 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_21 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_22 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_25 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_28 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_30 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_37 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_42 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_49 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_57 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_60 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_61 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_62 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_63 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_64 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_65 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_67 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_70 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_72 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_75 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_76 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_77 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_85 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_92 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_96 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_97 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_98 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_99 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_100 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_101 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_102 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_103 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_104 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_105 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_106 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_107 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_108 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_109 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_110 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_111 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_112 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_113 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_114 | 1.0 | 0.0 | 1.0 |
| GMDKHDHI_115 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_116 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_117 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_118 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_119 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_120 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_122 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_123 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_124 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_125 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_126 | 0.0 | 1.0 | 0.0 |
| GMDKHDHI_127 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GMDKHDHI_85 | 3578 | 27087 | False | Siphoviridae | VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4052, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841 |
| GMDKHDHI_107 | 3453 | 11562 | False | Siphoviridae | VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704 |
Phigaro v2.4.0 (Database: Jan. 2024 release)