Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IEBPGLNE_4 | 6183 | 5989 | CspA | 2.30e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IEBPGLNE_1 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_2 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_3 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_4 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_5 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_6 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_7 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_8 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_9 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_11 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_13 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_14 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_16 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_18 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_19 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_20 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_21 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_26 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_27 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_29 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_35 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_38 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_39 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_40 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_41 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_42 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_43 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_44 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_45 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_46 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_47 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_48 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_49 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_51 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_52 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_53 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_54 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_57 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_58 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_61 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_65 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_70 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_74 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_85 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_87 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_93 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_94 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_95 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_96 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_97 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_98 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_99 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_100 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_101 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_102 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_103 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_104 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_105 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_106 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_107 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_108 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_109 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_110 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_111 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_112 | 1.0 | 0.0 | 1.0 |
| IEBPGLNE_113 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_114 | 0.0 | 1.0 | 0.0 |
| IEBPGLNE_115 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IEBPGLNE_45 | 3457 | 11566 | False | Siphoviridae | VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704 |
| IEBPGLNE_108 | 3582 | 27091 | False | Siphoviridae | VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4052, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)