Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
PEBMBLIH_73120067120771WalR1.11e-114transcriptional regulatory protein83.83100.00EPH95667
PEBMBLIH_5570287222CspR2.85e-30cold shock protein84.6198.48AAO82613
PEBMBLIH_5570287225CspA4.37e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
PEBMBLIH_10.01.00.0
PEBMBLIH_40.01.00.0
PEBMBLIH_80.01.00.0
PEBMBLIH_120.01.00.0
PEBMBLIH_130.01.00.0
PEBMBLIH_150.01.00.0
PEBMBLIH_160.01.00.0
PEBMBLIH_170.01.00.0
PEBMBLIH_180.01.00.0
PEBMBLIH_190.01.00.0
PEBMBLIH_200.01.00.0
PEBMBLIH_210.01.00.0
PEBMBLIH_221.00.01.0
PEBMBLIH_230.01.00.0
PEBMBLIH_240.01.00.0
PEBMBLIH_260.01.00.0
PEBMBLIH_280.01.00.0
PEBMBLIH_291.00.01.0
PEBMBLIH_300.01.00.0
PEBMBLIH_310.01.00.0
PEBMBLIH_320.01.00.0
PEBMBLIH_330.01.00.0
PEBMBLIH_351.00.01.0
PEBMBLIH_370.01.00.0
PEBMBLIH_470.01.00.0
PEBMBLIH_480.01.00.0
PEBMBLIH_490.01.00.0
PEBMBLIH_500.01.00.0
PEBMBLIH_510.01.00.0
PEBMBLIH_521.00.01.0
PEBMBLIH_530.01.00.0
PEBMBLIH_540.01.00.0
PEBMBLIH_550.01.00.0
PEBMBLIH_560.01.00.0
PEBMBLIH_570.01.00.0
PEBMBLIH_580.01.00.0
PEBMBLIH_590.01.00.0
PEBMBLIH_600.01.00.0
PEBMBLIH_610.01.00.0
PEBMBLIH_620.01.00.0
PEBMBLIH_631.00.01.0
PEBMBLIH_640.01.00.0
PEBMBLIH_650.01.00.0
PEBMBLIH_660.01.00.0
PEBMBLIH_670.01.00.0
PEBMBLIH_690.01.00.0
PEBMBLIH_700.01.00.0
PEBMBLIH_711.00.01.0
PEBMBLIH_720.01.00.0
PEBMBLIH_730.01.00.0
PEBMBLIH_740.01.00.0
PEBMBLIH_750.01.00.0
PEBMBLIH_761.00.01.0
PEBMBLIH_780.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
PEBMBLIH_13379621922FalseSiphoviridaeVOG0725, VOG0799, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4564, VOG0720, VOG10227, VOG0796, VOG0638, VOG0788, VOG0198, VOG4693, VOG4566, VOG0186, VOG1309, VOG7298, VOG0181
PEBMBLIH_214777765815FalseSiphoviridaeVOG0535, VOG0322, VOG6545, VOG5046, VOG0189, VOG6005, VOG0198, VOG6495, VOG2124, VOG3699, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799
PEBMBLIH_37324869353517FalseSiphoviridaeVOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG4566, VOG5073
PEBMBLIH_73108285118311FalseSiphoviridaeVOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements