Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HPMAHIPH_87 | 274399 | 275103 | WalR | 1.76e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HPMAHIPH_95 | 180994 | 180800 | CspR | 8.30e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HPMAHIPH_95 | 180994 | 180797 | CspA | 1.27e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HPMAHIPH_1 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_2 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_3 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_4 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_5 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_8 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_13 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_14 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_17 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_20 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_22 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_32 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_34 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_35 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_36 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_37 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_38 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_39 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_41 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_42 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_43 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_44 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_45 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_46 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_47 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_48 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_49 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_51 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_52 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_53 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_54 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_55 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_56 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_57 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_58 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_59 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_60 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_61 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_62 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_64 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_65 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_66 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_68 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_71 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_74 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_75 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_77 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_79 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_80 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_81 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_82 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_83 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_84 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_85 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_86 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_87 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_88 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_89 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_90 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_91 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_92 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_93 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_94 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_95 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_96 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_97 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_99 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_100 | 0.0 | 1.0 | 0.0 |
| HPMAHIPH_101 | 1.0 | 0.0 | 1.0 |
| HPMAHIPH_102 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HPMAHIPH_34 | 22925 | 26004 | False | Siphoviridae | VOG11077, VOG2124, VOG4552, VOG10059, VOG0181 |
| HPMAHIPH_34 | 29047 | 54004 | False | Siphoviridae | VOG10015, VOG0044, VOG2602, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599 |
| HPMAHIPH_54 | 25268 | 32743 | False | Siphoviridae | VOG10077, VOG3304, VOG4602, VOG9667, VOG4552, VOG0226, VOG4799 |
| HPMAHIPH_66 | 5196 | 25202 | False | Siphoviridae | VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498 |
| HPMAHIPH_97 | 848 | 19402 | False | Siphoviridae | VOG3699, VOG10227, VOG0720, VOG4564, VOG4555, VOG0694, VOG4713, VOG1320, VOG5660, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4856 |
| HPMAHIPH_99 | 10915 | 21160 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908 |
Phigaro v2.4.0 (Database: Jan. 2024 release)