Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KNJJMJLP_1 | 59548 | 58844 | WalR | 1.85e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KNJJMJLP_3 | 7146 | 7340 | CspR | 4.11e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KNJJMJLP_3 | 7146 | 7343 | CspA | 6.31e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KNJJMJLP_1 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_2 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_3 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_4 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_5 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_6 | 1.0 | 0.0 | 1.0 |
| KNJJMJLP_7 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_8 | 1.0 | 0.0 | 1.0 |
| KNJJMJLP_10 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_11 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_12 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_18 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_24 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_27 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_33 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_41 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_43 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_44 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_45 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_46 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_47 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_48 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_49 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_50 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_51 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_52 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_53 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_54 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_55 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_56 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_57 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_58 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_59 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_60 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_61 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_62 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_64 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_66 | 1.0 | 0.0 | 1.0 |
| KNJJMJLP_67 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_68 | 1.0 | 0.0 | 1.0 |
| KNJJMJLP_69 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_70 | 1.0 | 0.0 | 1.0 |
| KNJJMJLP_71 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_75 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_80 | 0.0 | 1.0 | 0.0 |
| KNJJMJLP_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KNJJMJLP_4 | 81047 | 105782 | False | Siphoviridae | VOG0054, VOG0753, VOG8294, VOG4705, VOG0804, VOG9640, VOG8438, VOG3463, VOG3462, VOG0801, VOG3949, VOG3636, VOG1323, VOG0725, VOG0799, VOG1353, VOG0723, VOG4713, VOG1887, VOG3434, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616, VOG0198 |
| KNJJMJLP_4 | 110016 | 111899 | False | Unknown | VOG6495, VOG0186 |
| KNJJMJLP_54 | 71377 | 92290 | False | Siphoviridae | VOG0866, VOG8294, VOG0602, VOG1637, VOG8917, VOG0648, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| KNJJMJLP_54 | 100086 | 104258 | False | Siphoviridae | VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
Phigaro v2.4.0 (Database: Jan. 2024 release)