Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LBDHIIIE_33 | 36506 | 37210 | WalR | 4.49e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LBDHIIIE_38 | 7144 | 7338 | CspR | 4.24e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LBDHIIIE_38 | 7144 | 7341 | CspA | 6.50e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LBDHIIIE_86 | 1475 | 2404 | rep28 | 930 / 930 | 99.46 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBDHIIIE_1 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_2 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_9 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_17 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_22 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_26 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_28 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_29 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_30 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_31 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_32 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_33 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_34 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_35 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_36 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_37 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_38 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_39 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_40 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_41 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_42 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_43 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_44 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_45 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_46 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_47 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_48 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_49 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_50 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_51 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_52 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_53 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_54 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_55 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_56 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_57 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_58 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_61 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_62 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_63 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_64 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_65 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_66 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_68 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_69 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_70 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_71 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_73 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_74 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_75 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_79 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_80 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_82 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_83 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_84 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_86 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_87 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_88 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_89 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_91 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_92 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_93 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_94 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_95 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_97 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_98 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_99 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_100 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_101 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_102 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_103 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_104 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_108 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_109 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_110 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_111 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_112 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_113 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_115 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_116 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_118 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_119 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_121 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_122 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_124 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_130 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_131 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_138 | 0.0 | 1.0 | 0.0 |
| LBDHIIIE_142 | 1.0 | 0.0 | 1.0 |
| LBDHIIIE_151 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBDHIIIE_1 | 178584 | 200496 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| LBDHIIIE_33 | 25017 | 34970 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
| LBDHIIIE_47 | 16473 | 39358 | False | Siphoviridae | VOG8917, VOG4856, VOG4619, VOG0801, VOG1323, VOG0725, VOG0799, VOG1321, VOG5660, VOG1320, VOG4713, VOG0694, VOG4555, VOG1300, VOG4564, VOG0720, VOG10227, VOG0796, VOG3558 |
Phigaro v2.4.0 (Database: Jan. 2024 release)