Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LEPMCGDO_37 | 142076 | 141372 | WalR | 2.35e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LEPMCGDO_25 | 85907 | 85713 | CspR | 4.03e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LEPMCGDO_25 | 85907 | 85710 | CspA | 6.19e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEPMCGDO_3 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_7 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_9 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_10 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_11 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_12 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_13 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_14 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_15 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_16 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_17 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_18 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_19 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_20 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_21 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_22 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_23 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_24 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_25 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_26 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_27 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_28 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_29 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_31 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_32 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_33 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_34 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_36 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_37 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_39 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_40 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_41 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_42 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_45 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_47 | 1.0 | 0.0 | 1.0 |
| LEPMCGDO_51 | 1.0 | 0.0 | 1.0 |
| LEPMCGDO_52 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_54 | 1.0 | 0.0 | 1.0 |
| LEPMCGDO_55 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_57 | 1.0 | 0.0 | 1.0 |
| LEPMCGDO_58 | 1.0 | 0.0 | 1.0 |
| LEPMCGDO_59 | 1.0 | 0.0 | 1.0 |
| LEPMCGDO_60 | 1.0 | 0.0 | 1.0 |
| LEPMCGDO_63 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_66 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_67 | 1.0 | 0.0 | 1.0 |
| LEPMCGDO_70 | 0.0 | 1.0 | 0.0 |
| LEPMCGDO_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LEPMCGDO_16 | 450842 | 479311 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG8239, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG0741, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG4566, VOG5073 |
| LEPMCGDO_22 | 154850 | 190058 | False | Siphoviridae | VOG3443, VOG1191, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6972, VOG0052, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG10904, VOG4548, VOG0321 |
| LEPMCGDO_24 | 6674 | 10942 | False | Siphoviridae | VOG0650, VOG1302, VOG7236, VOG4552, VOG8520, VOG8520, VOG4602 |
| LEPMCGDO_37 | 143834 | 154154 | False | Siphoviridae | VOG0204, VOG4553, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
| LEPMCGDO_70 | 53430 | 87220 | False | Siphoviridae | VOG3549, VOG0650, VOG0535, VOG0322, VOG6545, VOG5046, VOG4693, VOG0044, VOG0198, VOG10963, VOG0686, VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG0801, VOG4619, VOG8438, VOG0870, VOG0804, VOG4705, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)