Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BJPHDPLL_23 | 73258 | 73962 | WalR | 8.14e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| BJPHDPLL_3 | 7037 | 7231 | CspR | 4.24e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BJPHDPLL_3 | 7037 | 7234 | CspA | 6.50e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BJPHDPLL_32 | 2568 | 3497 | rep28 | 930 / 930 | 97.74 | CP003162 |
| BJPHDPLL_27 | 2554 | 3510 | repUS64 | 959 / 954 | 85.19 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BJPHDPLL_3 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_5 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_7 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_9 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_11 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_12 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_17 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_18 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_19 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_20 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_21 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_22 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_23 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_24 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_25 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_26 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_27 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_28 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_29 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_30 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_31 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_32 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_33 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_34 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_35 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_36 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_37 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_38 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_40 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_42 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_43 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_44 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_45 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_46 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_47 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_48 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_50 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_51 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_52 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_53 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_54 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_55 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_56 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_59 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_60 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_61 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_62 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_63 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_64 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_65 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_66 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_67 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_68 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_70 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_71 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_72 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_75 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_76 | 1.0 | 0.0 | 1.0 |
| BJPHDPLL_80 | 0.0 | 1.0 | 0.0 |
| BJPHDPLL_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BJPHDPLL_24 | 5522 | 40507 | False | Siphoviridae | VOG0650, VOG5073, VOG0685, VOG0283, VOG0226, VOG0514, VOG4566, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG0753 |
| BJPHDPLL_33 | 3722 | 27651 | False | Siphoviridae | VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
| BJPHDPLL_35 | 6309 | 17900 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
| BJPHDPLL_43 | 1464 | 23799 | False | Siphoviridae | VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG8294, VOG1637, VOG0054, VOG0713 |
Phigaro v2.4.0 (Database: Jan. 2024 release)