Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PAJPOHPK_36 | 73252 | 73956 | WalR | 6.44e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PAJPOHPK_18 | 7033 | 7227 | CspR | 4.23e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PAJPOHPK_18 | 7033 | 7230 | CspA | 6.49e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PAJPOHPK_67 | 217 | 1170 | repUS64 | 954 / 954 | 97.90 | JN601038 |
| PAJPOHPK_12 | 2284 | 3313 | rep38 | 1040 / 1104 | 82.02 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAJPOHPK_1 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_2 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_3 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_4 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_5 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_6 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_7 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_8 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_9 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_10 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_11 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_12 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_13 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_15 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_16 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_17 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_18 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_19 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_20 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_21 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_22 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_23 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_24 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_26 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_27 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_28 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_30 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_33 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_34 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_35 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_36 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_42 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_47 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_48 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_49 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_50 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_51 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_52 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_53 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_54 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_55 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_56 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_57 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_58 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_59 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_60 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_61 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_62 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_63 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_64 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_65 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_66 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_67 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_68 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_69 | 1.0 | 0.0 | 1.0 |
| PAJPOHPK_71 | 0.0 | 1.0 | 0.0 |
| PAJPOHPK_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAJPOHPK_6 | 34429 | 61415 | False | Siphoviridae | VOG0189, VOG0713, VOG0054, VOG1637, VOG8294, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4599, VOG4633, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG3381, VOG0198, VOG1049, VOG3643, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)