Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ELKPJINH_59 | 43432 | 42728 | WalR | 2.47e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| ELKPJINH_103 | 7146 | 7340 | CspR | 4.10e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| ELKPJINH_103 | 7146 | 7343 | CspA | 6.29e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ELKPJINH_62 | 872 | 1828 | repUS64 | 958 / 954 | 91.86 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ELKPJINH_1 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_8 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_13 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_18 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_23 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_25 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_27 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_30 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_31 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_36 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_39 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_41 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_46 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_47 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_48 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_49 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_51 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_52 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_55 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_56 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_58 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_59 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_60 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_62 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_63 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_64 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_65 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_66 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_67 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_68 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_69 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_70 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_71 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_72 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_73 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_74 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_75 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_76 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_77 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_78 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_79 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_80 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_81 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_82 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_83 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_84 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_85 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_86 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_88 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_89 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_90 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_91 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_92 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_93 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_94 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_95 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_96 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_97 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_98 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_99 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_100 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_101 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_102 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_103 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_104 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_105 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_106 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_107 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_109 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_111 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_115 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_116 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_117 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_119 | 0.0 | 1.0 | 0.0 |
| ELKPJINH_121 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_122 | 1.0 | 0.0 | 1.0 |
| ELKPJINH_124 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ELKPJINH_63 | 94783 | 127802 | False | Siphoviridae | VOG0753, VOG4615, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG1886, VOG5068, VOG0267, VOG4581, VOG7810, VOG4841, VOG0198, VOG3643, VOG0195, VOG1298, VOG0159, VOG4693, VOG11024, VOG0189, VOG8647, VOG0514, VOG0226 |
| ELKPJINH_124 | 30144 | 60619 | False | Siphoviridae | VOG1637, VOG8294, VOG9657, VOG1637, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG0198, VOG4693, VOG4552, VOG4566, VOG0186, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)