Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DPNELIAC_230 | 27863 | 27159 | WalR | 5.50e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| DPNELIAC_33 | 1911 | 1717 | CspR | 3.98e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| DPNELIAC_33 | 1911 | 1714 | CspA | 6.11e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DPNELIAC_108 | 6339 | 7274 | rep28 | 936 / 936 | 100.00 | CP005948 |
| DPNELIAC_48 | 2175 | 3077 | rep38 | 903 / 903 | 99.56 | CP005943 |
| DPNELIAC_137 | 8482 | 9582 | repUS73 | 1101 / 1101 | 94.46 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DPNELIAC_1 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_2 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_3 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_4 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_6 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_7 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_8 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_9 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_10 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_12 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_13 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_14 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_16 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_17 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_18 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_19 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_20 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_22 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_23 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_24 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_28 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_29 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_32 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_33 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_34 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_35 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_36 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_40 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_41 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_42 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_43 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_47 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_48 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_49 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_50 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_51 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_52 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_54 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_55 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_57 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_59 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_60 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_62 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_63 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_65 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_67 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_68 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_72 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_73 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_77 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_81 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_82 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_83 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_85 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_89 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_91 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_92 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_94 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_95 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_97 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_98 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_99 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_100 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_108 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_110 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_111 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_114 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_115 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_119 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_124 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_131 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_132 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_137 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_138 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_142 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_143 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_144 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_147 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_153 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_156 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_161 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_162 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_163 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_165 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_167 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_173 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_176 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_177 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_178 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_182 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_186 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_189 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_196 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_201 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_202 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_204 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_210 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_211 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_215 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_219 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_223 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_224 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_226 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_228 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_230 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_232 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_233 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_234 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_237 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_238 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_239 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_240 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_241 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_242 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_243 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_244 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_245 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_246 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_247 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_248 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_250 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_251 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_252 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_253 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_254 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_255 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_256 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_257 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_258 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_260 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_261 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_262 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_263 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_264 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_265 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_266 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_267 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_269 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_270 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_271 | 1.0 | 0.0 | 1.0 |
| DPNELIAC_272 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_273 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_274 | 0.0 | 1.0 | 0.0 |
| DPNELIAC_275 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DPNELIAC_1 | 1856 | 18534 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631 |
| DPNELIAC_224 | 10144 | 21515 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
| DPNELIAC_253 | 5425 | 24562 | False | Siphoviridae | VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG1414, VOG4660, VOG5361, VOG8294, VOG1637 |
| DPNELIAC_267 | 1794 | 15949 | False | Siphoviridae | VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660 |
Phigaro v2.4.0 (Database: Jan. 2024 release)