Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LKKAGPHO_50 | 53239 | 52535 | WalR | 9.83e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LKKAGPHO_16 | 91561 | 91367 | CspR | 4.36e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LKKAGPHO_16 | 91561 | 91364 | CspA | 6.69e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKKAGPHO_2 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_5 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_6 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_9 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_15 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_16 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_17 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_18 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_19 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_20 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_21 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_22 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_23 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_24 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_25 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_26 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_27 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_28 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_29 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_30 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_31 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_32 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_33 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_35 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_36 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_37 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_38 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_39 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_40 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_41 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_42 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_43 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_44 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_45 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_46 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_47 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_48 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_49 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_50 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_51 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_52 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_53 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_54 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_55 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_56 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_58 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_60 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_61 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_62 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_63 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_64 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_65 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_66 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_71 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_72 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_75 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_76 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_77 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_78 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_80 | 1.0 | 0.0 | 1.0 |
| LKKAGPHO_81 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_84 | 0.0 | 1.0 | 0.0 |
| LKKAGPHO_87 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKKAGPHO_38 | 2447 | 24751 | False | Siphoviridae | VOG6382, VOG8438, VOG8704, VOG4619, VOG0801, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG5616 |
| LKKAGPHO_48 | 2360 | 21588 | False | Siphoviridae | VOG4841, VOG0741, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG8239, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605 |
| LKKAGPHO_50 | 55527 | 62722 | False | Siphoviridae | VOG0204, VOG4553, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205 |
| LKKAGPHO_51 | 2469 | 24136 | False | Siphoviridae | VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804 |
| LKKAGPHO_64 | 1049 | 20757 | False | Siphoviridae | VOG4599, VOG4605, VOG5631, VOG0660, VOG5852, VOG4586, VOG0207, VOG5660, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)